View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15692_high_1 (Length: 649)
Name: NF15692_high_1
Description: NF15692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15692_high_1 |
 | |
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| [»] scaffold0004 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 547; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 16 - 638
Target Start/End: Complemental strand, 49350141 - 49349517
Alignment:
| Q |
16 |
aagagcttgttaaggaaggtattaat-----taagaagaagtgtatcaataaacatacagtatactgagaatgatcctctactgccatcaaagaacttag |
110 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49350141 |
aagagcttgttaaggaaggtattaatataattaagaagaagtgtatcaataaacatacagtatactgagaatgatcctctactgccatcaaagaacttag |
49350042 |
T |
|
| Q |
111 |
atcaaagagtgagtaaaagtggaaaatctatgtcccatggcctcagctcaaagtgttgtaattgagggatatttgaattttgtataattggattcatttg |
210 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49350041 |
atcaaagagt----aaaagtggaaaatttatgtcccatggcctcagctcaaagtgttgtaattgagggatatttgaattttgtataattggattcatttg |
49349946 |
T |
|
| Q |
211 |
tctttcaagggctttatgtgctcattgtagactaaaacttctaggcgttttt-cccctcctttttgcctggtggaaactaaagggtattgttctataaac |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49349945 |
tctttcaagggctttatgtgctcattgtagactaaaacttctaggcgttttttcccctcctttttgcctggtggaaactaaagggtattgttctataaac |
49349846 |
T |
|
| Q |
310 |
aattatctttttctttcagttatatgggacaacattatttttctgagttggaagttgttgcttgtatgccacgtttctaaactgtggatgtcagcaattt |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
49349845 |
aattatctttttctttcagttatatgggacaacattatttttctgagttggaagttgttgcttgtatgccacgtttcttaactgtggatgtgagcaattt |
49349746 |
T |
|
| Q |
410 |
ggtttgatcaggattatgcaatctgaatactctgtgtgatagacnnnnnnnggttcttgtaggatatacagtatggtgtatatatctagcggattgtgtt |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
49349745 |
ggtttgatcaggattatgcaatctgaatactctgtgtgatagactttttttggttcttgtaggatatatagtatggtgtatatatctagcggattgtgtt |
49349646 |
T |
|
| Q |
510 |
aatggattaacttgaaaaattgtctcatgtggagttattctaaattctaaaaagagcatgtagggttagaagttttgtaaatgaccaagtgaagtctatt |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49349645 |
aatggattaacttgaaaaattgtctcatgtggagttattctaaattctaaaaagagcatgtagggttagaagttttgtaaatgaccaagtgaagtctatt |
49349546 |
T |
|
| Q |
610 |
ctaaaaatagtttaaatgaatgatatatt |
638 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
49349545 |
ctaaaaatagtttaaatgaatgatatatt |
49349517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 73 - 448
Target Start/End: Complemental strand, 49361998 - 49361619
Alignment:
| Q |
73 |
tactgagaatgatcctctactgccatcaaagaacttagatcaaagagtgagtaaaagtggaaaatctatgtcccatggcctcagctcaaagtgttgtaat |
172 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| || ||||||||||||| ||||||||||||||||| |
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| T |
49361998 |
tactaagaatgatcctctactgccattgaagaacttagatcaaggagt----aaaagtggaaaatttacgtcccatggcctcggctcaaagtgttgtaat |
49361903 |
T |
|
| Q |
173 |
tgagggatatttgaattttgtataattggattcatttgtctttcaagggctttatgtgctcattgtagactaaaacttctaggcgttttt-cccctcctt |
271 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||| ||||| | ||| | |
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| T |
49361902 |
tgagggatatttaaattttgaataattggattcatttgtctttcaagggctttatgtgctca-tgtagactaaaaattaaaggcatttttattcttccat |
49361804 |
T |
|
| Q |
272 |
tttgcctggtggaaac-taaagggtattgttctataaacaattatctttttctttcagttatatgggacaacattatttttctgagttggaagttgttgc |
370 |
Q |
| |
|
|||||||||||||||| || |||||||| ||||||||||||||||||||||||| || |||| ||| || || |||||||||||||||||||||||| |
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| T |
49361803 |
tttgcctggtggaaacttagagggtattattctataaacaattatctttttcttacatttatttggtaccac---atttttctgagttggaagttgttgt |
49361707 |
T |
|
| Q |
371 |
ttgtatgccacgt----------ttctaaactgtggatgtcagcaatttggtttgatcaggattatgcaatctgaatactctgtgtga |
448 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| |||||| || || ||||| |||| ||||||||| ||| | ||||||| |
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| T |
49361706 |
ttgtgtgccacgtttcatgtggattctaaactgtggatgtgagcaatatgattcgatcaagattctgcaatctggatagtttgtgtga |
49361619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 349 - 448
Target Start/End: Complemental strand, 19030309 - 19030210
Alignment:
| Q |
349 |
tttctgagttggaagttgttgcttgtatgccacgtttctaaactgtggatgtcagcaatttggtttgatcaggattatgcaatctgaatactctgtgtga |
448 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||||||||||||| |
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| T |
19030309 |
tttctgagttggaagttgttgcttgtatgccacgtttctaaactgtggatgtgagcaatttggtttaatcaggattctgcaatctggatactctgtgtga |
19030210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 492 - 552
Target Start/End: Complemental strand, 19030112 - 19030052
Alignment:
| Q |
492 |
tatctagcggattgtgttaatggattaacttgaaaaattgtctcatgtggagttattctaa |
552 |
Q |
| |
|
||||||| ||||||| ||||||||||||| ||||||||||||| ||||||||||||||||| |
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|
| T |
19030112 |
tatctagtggattgttttaatggattaacatgaaaaattgtcttatgtggagttattctaa |
19030052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 16 - 400
Target Start/End: Complemental strand, 250447 - 250072
Alignment:
| Q |
16 |
aagagcttgttaaggaaggtattaattaagaagaagtgtatcaataaacatacagtatactgagaatgatcctctactgccatcaaagaacttagatcaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
250447 |
aagagcttgttaaggaaggtattaattaagaag---tgtatcaataaacatacagtatactgagaatgatcctctactgccatcaaagaacttagatcaa |
250351 |
T |
|
| Q |
116 |
agagtgagtaaaagtggaaaatctatgtcccatggcctcagctcaaagtgttgtaattgagggatatttgaattttgtataattggattcatttgtcttt |
215 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
250350 |
agagt----aaaagtggaaaatttatgtcccatggcctcagctcaaagtgttgcaattgagggatatttgaattttgtataattggattcatttgtcttt |
250255 |
T |
|
| Q |
216 |
caagggctttatgtgctcattgtagactaaaacttctaggcgt-ttttcccctcctttttgcctggtggaaactaaagggtattgttctataaacaatta |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
250254 |
caagggctttatgtgctcattgtagactaaaacttctaggcgttttttcccctcctttttgcctggtggaaactaaagggtattgttctataaacaatta |
250155 |
T |
|
| Q |
315 |
tctttttctttcagttatatgggacaacattatttttctgagttggaagttgttgcttgtatgccacgtttctaaactgtggatgt |
400 |
Q |
| |
|
||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
250154 |
tctttttctttcagttatatgggaccac---atttttttgagttggaagttgttgcttgtatgccacgtttctaaactatggatgt |
250072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 463 - 638
Target Start/End: Complemental strand, 249946 - 249771
Alignment:
| Q |
463 |
ttcttgtaggatatacagtatggtgtatatatctagcggattgtgttaatggattaacttgaaaaattgtctcatgtggagttattctaaattctaaaaa |
562 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
249946 |
ttcttgtaggatatatagtatggtgtatatatctagcggattgtgttagttgattaacttgaaaaattgtctcatgtggagttattctaaattctaaaaa |
249847 |
T |
|
| Q |
563 |
gagcatgtagggttagaagttttgtaaatgaccaagtgaagtctattctaaaaatagtttaaatgaatgatatatt |
638 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
249846 |
gagcatgtagggttagaagttttgtaaatgactaagtgaagtctattctaaaaatagtttaaatgaatgatatatt |
249771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 500 - 559
Target Start/End: Original strand, 42199941 - 42200000
Alignment:
| Q |
500 |
ggattgtgttaatggattaacttgaaaaattgtctcatgtggagttattctaaattctaa |
559 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
42199941 |
ggattgtgttaatggattaacttgaaaaattgtctcctgtggagttgttctaaattctaa |
42200000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 346 - 434
Target Start/End: Original strand, 42199791 - 42199894
Alignment:
| Q |
346 |
atttttctgagttggaagttgttgcttgtatgccac----------gtttctaaactgtggatgtcagcaatttg-----gtttgatcaggattatgcaa |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||| ||||| |
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| T |
42199791 |
atttttctgagttggaagttgttgcttgtatgccacatttaatgtggtttctaaaccgtggatgtcagcaatttggtttggtttgatcaggattttgcaa |
42199890 |
T |
|
| Q |
431 |
tctg |
434 |
Q |
| |
|
|||| |
|
|
| T |
42199891 |
tctg |
42199894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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