View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15692_high_3 (Length: 551)
Name: NF15692_high_3
Description: NF15692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15692_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 3581675 - 3582095
Alignment:
| Q |
1 |
tttgttctttacattatcgtttctttgttccttttcttttcttactccattattaacagaaaattaatatataaagctctttacttaagggatatgtgtg |
100 |
Q |
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||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
3581675 |
tttgttctttacattattgtttctttgttctttttcttttcttactccattattaacagaaaattaatttctaaagctctttacttaagggatatgtgtg |
3581774 |
T |
|
| Q |
101 |
taggtttaaaatggaagccaaagaaagtctctgcagaatcactacgaaagtgtttgacagaagcaactaccaactttgggcagtgcatgcatgtcgaggc |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3581775 |
taggtttaaaatggaagccaaagaaagtctctgcggaatcactacgaaagtgtttgacagaagcaactaccaactttgggcagtgca----tgtcgaggc |
3581870 |
T |
|
| Q |
201 |
atatttagaagatttagatctatggggggaagtggaagaagattatgaaatccctatacttctgagcaatctcacattgacttcaatctaaaggaatgtg |
300 |
Q |
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| T |
3581871 |
atatttagaagatttagatctatggggggaagtggaagaagattatgaaatccctatacttctgagcaatctcacattgacttcaatctaaaggaatgtg |
3581970 |
T |
|
| Q |
301 |
aaacttgcttcagaaattcaaacttcaaagagtaaaggattccaacgaccaaagattatttgacaagtttctcagtattataagcaatgtgagacttcta |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3581971 |
aaacttgcttcagaaattcaaacttcaaagagtaaaggattccaacgaccaaagattatttgacaagtttctcagtattgtaagcaatgtgagacttcta |
3582070 |
T |
|
| Q |
401 |
gtaatgtgtgactcaagaattgttg |
425 |
Q |
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| T |
3582071 |
gtaatgtgtgactcaagaattgttg |
3582095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 86 - 183
Target Start/End: Original strand, 7874416 - 7874513
Alignment:
| Q |
86 |
taagggatatgtgtgtaggtttaaaatggaagccaaagaaagtctctgcagaatcactacgaaagtgtttgacagaagcaactaccaactttgggcag |
183 |
Q |
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|||||||| |||||||| ||||| ||||||||| ||| |||||||| | |||||||| ||| |||| ||||||||||||| ||||||||||| |||| |
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| T |
7874416 |
taagggatttgtgtgtaattttaacatggaagccgaagcaagtctctacggaatcactccgacagtgcttgacagaagcaattaccaactttgagcag |
7874513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 3581626 - 3581676
Alignment:
| Q |
1 |
tttgttctttacattatcgtttctttgttccttttcttttcttactccatt |
51 |
Q |
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||||| ||||||||| | |||||||||||| |||||||||||| ||||||| |
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| T |
3581626 |
tttgtcctttacattcttgtttctttgttctttttcttttcttgctccatt |
3581676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 6839302 - 6839266
Alignment:
| Q |
150 |
gtgtttgacagaagcaactaccaactttgggcagtgc |
186 |
Q |
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| T |
6839302 |
gtgttcgacggaagcaactaccaactttgggcagtgc |
6839266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 149 - 182
Target Start/End: Original strand, 2765144 - 2765177
Alignment:
| Q |
149 |
agtgtttgacagaagcaactaccaactttgggca |
182 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
2765144 |
agtgtttgacagaagcaactaccaactttgggca |
2765177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 32525277 - 32525313
Alignment:
| Q |
150 |
gtgtttgacagaagcaactaccaactttgggcagtgc |
186 |
Q |
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||||| ||| ||||||||||||||||||||||||||| |
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| T |
32525277 |
gtgttcgacggaagcaactaccaactttgggcagtgc |
32525313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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