View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15692_low_2 (Length: 551)
Name: NF15692_low_2
Description: NF15692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15692_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 26 - 339
Target Start/End: Complemental strand, 21012268 - 21011955
Alignment:
| Q |
26 |
aagtgattgtgtcgctcgcgtggttcatgagtttccgtgaatgttaaattgatgaatggcaatttttgtttcctcaacaggtcaacgagggaagtgcaag |
125 |
Q |
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| T |
21012268 |
aagtgattgcgtcgctcaagtggttcatgagtttccgtgaatgttaaattgatgaatggcaatttttgtttcctcaacaggtcaacgagggaagtgcaag |
21012169 |
T |
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| Q |
126 |
tgccagtgagattttagctggggcgttacatgataacggtcgagcaattcttgtagggaacaaaacatttggaaaaggaaagattcaggtaccagtattt |
225 |
Q |
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| T |
21012168 |
tgccagcgagattttagctggggcgttacatgataacggtcgagcaattcttgtagggaacaaaacatttggaaaaggaaagattcaggtaccagtattt |
21012069 |
T |
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| Q |
226 |
ttcgttacataatgatcatacagtgttgnnnnnnnnnnnnaaatcttgttattaagcaatatttccaaaaggaaaatcatgaaaaaagaggtaatgtaat |
325 |
Q |
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| T |
21012068 |
tttgttacataatgatcatacagtgttgtttttattttttaaatcttgttattaagtaatatttccaaaaggaaaatcatgaaaaaagaggtaatgtaat |
21011969 |
T |
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| Q |
326 |
gtatatatgaggtg |
339 |
Q |
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| T |
21011968 |
gtatatatgaggtg |
21011955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 337 - 533
Target Start/End: Complemental strand, 21011923 - 21011728
Alignment:
| Q |
337 |
gtgttttctgtttaaaaggcgcgtaccaagcatattgatggtaggtgtatagctccaacacctcagattgaaggcatgtatggtgtccgaaactaacacg |
436 |
Q |
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| T |
21011923 |
gtgttttctgtttaaaaggcgtgtaccaagcatattgacggtaggtgtatagctccaacacctcagattgaaggcatgtctggtgtccgaaactaacatg |
21011824 |
T |
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| Q |
437 |
tatcggtgcttgacccgaacacaatacta-tacatgtagttatattgaattattctattt-ctcaaattattaccaa-accaacatgtctttgtcggtgt |
533 |
Q |
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| T |
21011823 |
tatcg-tgcttgacccgaacacaatactaatacatgtggttatattgaattattctattttctcaaatta---ccagtaccaacatgtctttgtcggtgt |
21011728 |
T |
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