View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15692_low_4 (Length: 462)
Name: NF15692_low_4
Description: NF15692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15692_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 4 - 445
Target Start/End: Complemental strand, 20028002 - 20027546
Alignment:
| Q |
4 |
agaaacaaaagaagaagaactcatggtttcaccatcaacaggtgaaaacctaactctcagagaagcttttttcatcaaatcttccatcaaacactcaaca |
103 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20028002 |
agaaacaaaagaagaagaactcatggtttcaccatcaacgggtgaaaacctaacactcagagaagcttttttcatcaaatcttccatcaaacactcaaca |
20027903 |
T |
|
| Q |
104 |
ccaccaccacaaccaccccttttctcaattt------------ccacaaatttgccattacaagtaaagtacaatggatggagaatccc---------ac |
182 |
Q |
| |
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|||||||||| |||||||||| |||| |||| |||| ||||||||||||||||||||||||||||||||| | || |
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| T |
20027902 |
ccaccaccac------cccttttctctattttctctcaaaccaccaccaattcgccattacaagtaaagtacaatggatggagaatacagccaaagttac |
20027809 |
T |
|
| Q |
183 |
aaccagaatggaacaactgggtcacaaaattacaaccaaagtttgaatctttatggatcaaaactggaatatacaatgcaatcaaagcttctacttatga |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
20027808 |
aaccagaatggaacaactgggtcacaaaattacaaccaaagtttgaatctttatggatcaaaactggaatataccatgcaatcaaagcttctacttatga |
20027709 |
T |
|
| Q |
283 |
aatcaaaagggatgatgatttgattcttcaacttgctaatagatggtgttccaagaccaacacatttgtgttcccttggggagaatcaacaatcacattg |
382 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
20027708 |
aatcaaaagggatgatgatttgatgcttcaacttgctaatagatggtgttccaagaccaacacctttgtgttcccttggggagaatcaacaatcacattg |
20027609 |
T |
|
| Q |
383 |
gaagatacaaaagtttgttttggttactctcttttgggtgattctatttccacccctcttttg |
445 |
Q |
| |
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||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20027608 |
gaagatataaaggtttgttttggttactctcttttgggtgattctatttccacccctcttttg |
20027546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 4 - 445
Target Start/End: Original strand, 19962401 - 19962857
Alignment:
| Q |
4 |
agaaacaaaagaagaagaactcatggtttcaccatcaacaggtgaaaacctaactctcagagaagcttttttcatcaaatcttccatcaaacactcaaca |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||| |
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|
| T |
19962401 |
agaaacaaaagaagaagaactcatggtttcaccatcaaccggtgaaaacctaactctcaaacaagcttttttcatcaaatcttccatcaaacattcaaca |
19962500 |
T |
|
| Q |
104 |
ccaccaccacaaccaccccttttctcaatttcc------------acaaatttgccattacaagtaaagtacaatggatggagaatccc---------ac |
182 |
Q |
| |
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|||||||||| |||||||||| |||||| ||||||| |||||||||||||||||||| |||||||||||| | || |
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| T |
19962501 |
ccaccaccac------cccttttctctatttcctctcaaaccaccacaaattcgccattacaagtaaagtacagtggatggagaatacagccaaagttac |
19962594 |
T |
|
| Q |
183 |
aaccagaatggaacaactgggtcacaaaattacaaccaaagtttgaatctttatggatcaaaactggaatatacaatgcaatcaaagcttctacttatga |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19962595 |
aaccagaatggaacaactgggtcacaaaattacaaccaaagtttgaatctttatggatcaaaactggaatatacaatgcaatcaaagcttctacttatga |
19962694 |
T |
|
| Q |
283 |
aatcaaaagggatgatgatttgattcttcaacttgctaatagatggtgttccaagaccaacacatttgtgttcccttggggagaatcaacaatcacattg |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| |||||| |
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| T |
19962695 |
aatcaaaagggatgatgatttgattcttcaacttgctaatagatggtgttccaagaccaatacttttgttttcccttggggagaatcaacaattacattg |
19962794 |
T |
|
| Q |
383 |
gaagatacaaaagtttgttttggttactctcttttgggtgattctatttccacccctcttttg |
445 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
19962795 |
gaagatataaaggtttgttttggttactctcttttgggtgattctatttctacccctcttttg |
19962857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 135 - 445
Target Start/End: Original strand, 19967237 - 19967547
Alignment:
| Q |
135 |
ccacaaatttgccattacaagtaaagtacaatggatggagaatcccacaaccagaatggaacaactgggtcacaaaattacaaccaaagtttgaatcttt |
234 |
Q |
| |
|
|||||||||||||| || |||| ||||||||||| ||||||| || ||| |||||||| || ||||||| ||||||| |||||||||||||| ||| |
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|
| T |
19967237 |
ccacaaatttgccactagaagtgaagtacaatgggtggagaaggccgcaagatgaatggaagaaatgggtcaacaaattacgaccaaagtttgaattttt |
19967336 |
T |
|
| Q |
235 |
atggatcaaaactggaatatacaatgcaatcaaagcttctacttatgaaatcaaaagggatgatgatttgattcttcaacttgctaatagatggtgttcc |
334 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||| |||||| |||||| |||||||||||| |||||||||||||| |
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| T |
19967337 |
atggatcaaaactggaatataccatgctatcacagcttctacttatgaaatcaaaaggaatgatgctttgatccttcaacttgctgatagatggtgttcc |
19967436 |
T |
|
| Q |
335 |
aagaccaacacatttgtgttcccttggggagaatcaacaatcacattggaagatacaaaagtttgttttggttactctcttttgggtgattctatttcca |
434 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
19967437 |
aagaccaacacatttgtgttcccttggggagaatcaacaatcacattggaagatataaaggtttgttttggttactctcttttgggtgattctatttcca |
19967536 |
T |
|
| Q |
435 |
cccctcttttg |
445 |
Q |
| |
|
||||||||||| |
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|
| T |
19967537 |
cccctcttttg |
19967547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 135 - 432
Target Start/End: Complemental strand, 20021041 - 20020744
Alignment:
| Q |
135 |
ccacaaatttgccattacaagtaaagtacaatggatggagaatcccacaaccagaatggaacaactgggtcacaaaattacaaccaaagtttgaatcttt |
234 |
Q |
| |
|
||||||||||||||||| |||| ||||| |||| |||||| |||||| ||||||||| || ||||||| |||||| |||||||||||||| | | |
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|
| T |
20021041 |
ccacaaatttgccattagaagttaagtattatgggtggagagctccacaagaagaatggaagaaatgggtcaacaaattaagaccaaagtttgaatttct |
20020942 |
T |
|
| Q |
235 |
atggatcaaaactggaatatacaatgcaatcaaagcttctacttatgaaatcaaaagggatgatgatttgattcttcaacttgctaatagatggtgttcc |
334 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20020941 |
atggatcaaaactggaatataccatgctatcacagcttctacttatgaaatcaaaagggatgatgatttgattcttcaacttgctaatagatggtgttcc |
20020842 |
T |
|
| Q |
335 |
aagaccaacacatttgtgttcccttggggagaatcaacaatcacattggaagatacaaaagtttgttttggttactctcttttgggtgattctatttc |
432 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
20020841 |
aagaccaatacttttgtgttcccttggggagaatcaacaatcacattggaagatataaaggtttgttttggttactctcttttgggtgattctatttc |
20020744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 243 - 366
Target Start/End: Complemental strand, 14856545 - 14856422
Alignment:
| Q |
243 |
aaactggaatatacaatgcaatcaaagcttctacttatgaaatcaaaagggatgatgatttgattcttcaacttgctaatagatggtgttccaagaccaa |
342 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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|
| T |
14856545 |
aaactggaatatatcatgcaatcacagcttctacttatgaaatcaaaagggatgatgattttattcttgaacttgctaatagatggtgttccaagaccaa |
14856446 |
T |
|
| Q |
343 |
cacatttgtgttcccttggggaga |
366 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
14856445 |
tacttttgtgttcccttggggaga |
14856422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 135 - 251
Target Start/End: Complemental strand, 14856985 - 14856869
Alignment:
| Q |
135 |
ccacaaatttgccattacaagtaaagtacaatggatggagaatcccacaaccagaatggaacaactgggtcacaaaattacaaccaaagtttgaatcttt |
234 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| ||||||| |||||| ||||||||| || ||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
14856985 |
ccacaaatttgccattagaagtgaagtacaatgggtggagaactccacaagaagaatggaagaaatgggtcaaaaaattacaaccaaagtttgaattttt |
14856886 |
T |
|
| Q |
235 |
atggatcaaaactggaa |
251 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
14856885 |
atggatcaaaattggaa |
14856869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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