View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15692_low_5 (Length: 342)
Name: NF15692_low_5
Description: NF15692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15692_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 34900980 - 34900655
Alignment:
| Q |
1 |
taagacatacatgaatgaaataagaaactaatatcaacaaatctagacaacaaaaactcattcattcggaggagaaactatctcgtgaaggggaaaagaa |
100 |
Q |
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| T |
34900980 |
taagacatacatgaatgaaataagaa-ctaatatcaacaaatctagacaacaaaaactaattcattcggaggagaaactatctcgtgaagaggaaaagaa |
34900882 |
T |
|
| Q |
101 |
gaatcataaaatggaattagggtttccttcctaaagtttccattagcctcattagaagttgaagcaacaagaccacgataaaaattagggttagtttggt |
200 |
Q |
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| T |
34900881 |
gaatcataaaatggaattagggtttccttcctaaagtttccattagcctcattagaagttgaagcaacaagaccacgataaaaattagggttagtttggt |
34900782 |
T |
|
| Q |
201 |
aaacaaatacacgacgataaatattgtgatgtgagttaacatccaatattgaatagaagagttgaggttgaacaacatacaaccaaatgtccgataaacc |
300 |
Q |
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|||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34900781 |
aaacaaatccacagagataaatattgtgatgtgagttaacatccaatgttgaatagaagagttgaggttgaacaccatacaaccaaatgtccgataaacc |
34900682 |
T |
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| Q |
301 |
caaagcatatatattttaggtgaagat |
327 |
Q |
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||||||||||||||||||||||||||| |
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| T |
34900681 |
caaagcatatatattttaggtgaagat |
34900655 |
T |
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