View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15692_low_8 (Length: 233)

Name: NF15692_low_8
Description: NF15692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15692_low_8
NF15692_low_8
[»] chr4 (3 HSPs)
chr4 (112-214)||(4853133-4853235)
chr4 (112-214)||(2894012-2894114)
chr4 (112-179)||(6734923-6734990)
[»] chr1 (3 HSPs)
chr1 (112-214)||(14114212-14114314)
chr1 (112-184)||(15089004-15089076)
chr1 (112-184)||(22211612-22211684)
[»] chr6 (5 HSPs)
chr6 (112-214)||(33295596-33295698)
chr6 (112-214)||(28223204-28223306)
chr6 (112-214)||(29934012-29934114)
chr6 (18-81)||(14023324-14023387)
chr6 (122-214)||(5249438-5249530)
[»] chr7 (5 HSPs)
chr7 (111-214)||(42785364-42785467)
chr7 (112-214)||(4341839-4341941)
chr7 (112-184)||(3078223-3078295)
chr7 (112-176)||(3081669-3081733)
chr7 (112-173)||(21957955-21958015)
[»] scaffold0038 (1 HSPs)
scaffold0038 (112-214)||(23702-23804)
[»] chr2 (2 HSPs)
chr2 (112-214)||(2742784-2742886)
chr2 (112-202)||(2696454-2696544)
[»] chr8 (1 HSPs)
chr8 (112-214)||(5558511-5558613)
[»] chr5 (2 HSPs)
chr5 (112-214)||(41529133-41529235)
chr5 (112-214)||(37368338-37368439)
[»] chr3 (1 HSPs)
chr3 (112-185)||(28035190-28035263)


Alignment Details
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 112 - 214
Target Start/End: Complemental strand, 4853235 - 4853133
Alignment:
Q  112 gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttcc 211  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4853235 gctattttggaaaatggattatggagttttggagctagcaaaagctgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttcc 4853136  T
Q  212 ttt 214  Q
    |||    
T  4853135 ttt 4853133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 112 - 214
Target Start/End: Original strand, 2894012 - 2894114
Alignment:
Q  112 gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttcc 211  Q
    |||||||||||||||||| ||||||| ||||||||||| |||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  2894012 gctattttggaaaatggactatggagttttggagctagtaaaagctgcaaattgtggataagttgcttgtaatttcgggactaatgccaaggtgagttcc 2894111  T
Q  212 ttt 214  Q
    |||    
T  2894112 ttt 2894114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 6734923 - 6734990
Alignment:
Q  112 gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgctt 179  Q
    ||||||||||||||  |||||||||| ||||||| ||| | || |||||||||| |||||||||||||    
T  6734923 gctattttggaaaaatgattatggagttttggagatagaagaagctgcaaattggggataagctgctt 6734990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 112 - 214
Target Start/End: Original strand, 14114212 - 14114314
Alignment:
Q  112 gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttcc 211  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14114212 gctattttggaaaatggattatggagttttggagctagcaaaagctgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttcc 14114311  T
Q  212 ttt 214  Q
    |||    
T  14114312 ttt 14114314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 184
Target Start/End: Complemental strand, 15089076 - 15089004
Alignment:
Q  112 gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaat 184  Q
    ||||||||||||||  |||||||||| ||| ||| ||| | || |||||||||||||||||| ||||| ||||    
T  15089076 gctattttggaaaagtgattatggagttttagagatagaagaagctgcaaattgtggataagttgctttcaat 15089004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 184
Target Start/End: Complemental strand, 22211684 - 22211612
Alignment:
Q  112 gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaat 184  Q
    ||||||||||||||  |||||||||| ||| ||| ||| | || |||||||||||||||||| ||||| ||||    
T  22211684 gctattttggaaaagtgattatggagttttagagatagaagaagctgcaaattgtggataagttgctttcaat 22211612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 112 - 214
Target Start/End: Original strand, 33295596 - 33295698
Alignment:
Q  112 gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttcc 211  Q
    |||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33295596 gctattttggaaaatggattatggagttttggagctagtaaaagctgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttcc 33295695  T
Q  212 ttt 214  Q
    |||    
T  33295696 ttt 33295698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 112 - 214
Target Start/End: Complemental strand, 28223306 - 28223204
Alignment:
Q  112 gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttcc 211  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  28223306 gctattttggaaaatggattatggagttttggagctagcaaaagctgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggagagttac 28223207  T
Q  212 ttt 214  Q
    |||    
T  28223206 ttt 28223204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 112 - 214
Target Start/End: Original strand, 29934012 - 29934114
Alignment:
Q  112 gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttcc 211  Q
    |||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29934012 gctattttggaaaatggattatggatttttggagctagcaaaagctgcaaattgtggataagctgcttgtaatttcgggactaatgccaaggtgagttcc 29934111  T
Q  212 ttt 214  Q
    |||    
T  29934112 ttt 29934114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 14023387 - 14023324
Alignment:
Q  18 atacaaggtcgaaatgtgatttctccgatcaaatttggacgaacaaagttgtttgactatgata 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14023387 atacaaggtcgaaatgtgatttctccgatcaaatttggacgaacaaagttgtttgactatgata 14023324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 122 - 214
Target Start/End: Original strand, 5249438 - 5249530
Alignment:
Q  122 aaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttccttt 214  Q
    ||||||||||||| || ||||||| || ||||| ||| ||||| |||||||||||| |||||| |||||||||||||||||||||||||||||    
T  5249438 aaaatggattatgaagttttggagttaacaaaagctgaaaattatggataagctgcctgcaatctcgggactaatgccaaggtgagttccttt 5249530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 111 - 214
Target Start/End: Original strand, 42785364 - 42785467
Alignment:
Q  111 tgctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttc 210  Q
    ||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42785364 tgctattttggaaaatggactatggagttttggagctagcaaaagctgcaaattgtggataagctgcttgtaatttcgggactaatgccaaggtgagttc 42785463  T
Q  211 cttt 214  Q
    ||||    
T  42785464 cttt 42785467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 112 - 214
Target Start/End: Complemental strand, 4341941 - 4341839
Alignment:
Q  112 gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttcc 211  Q
    |||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4341941 gctattttggaaaatggattatggagttttggagctagcaaaagcttcaaattgtggataagttgcttgcaatttcgggactaatgccaaggtgagttcc 4341842  T
Q  212 ttt 214  Q
    |||    
T  4341841 ttt 4341839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 184
Target Start/End: Original strand, 3078223 - 3078295
Alignment:
Q  112 gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaat 184  Q
    ||||||||||||||  |||||||||| ||| ||| ||| | || |||||||||||||||||||||||| ||||    
T  3078223 gctattttggaaaagtgattatggagttttagagatagaagaagctgcaaattgtggataagctgctttcaat 3078295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 3081733 - 3081669
Alignment:
Q  112 gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctg 176  Q
    ||||||||||||||  |||||||||| ||| ||| ||| | || |||||||||||||||||||||    
T  3081733 gctattttggaaaagtgattatggagttttagagatagaagaagctgcaaattgtggataagctg 3081669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 21957955 - 21958015
Alignment:
Q  112 gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataag 173  Q
    ||||||||||||||||| ||||| || ||||||| |||||||| ||||| ||| ||||||||    
T  21957955 gctattttggaaaatgg-ttatgaagttttggagatagcaaaagctgcagattatggataag 21958015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 112 - 214
Target Start/End: Complemental strand, 23804 - 23702
Alignment:
Q  112 gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttcc 211  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  23804 gctattttggaaaatggattatggagttttggagctagcaaaagctgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggagagttac 23705  T
Q  212 ttt 214  Q
    |||    
T  23704 ttt 23702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 112 - 214
Target Start/End: Original strand, 2742784 - 2742886
Alignment:
Q  112 gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttcc 211  Q
    |||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2742784 gctattttggaaaatggattatggatttttggagctagcaaaagctgcaaattgtggataagctgcttgaaatttcgggactaatgccaaggtgagttcc 2742883  T
Q  212 ttt 214  Q
    |||    
T  2742884 ttt 2742886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 112 - 202
Target Start/End: Original strand, 2696454 - 2696544
Alignment:
Q  112 gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaatttcgggactaatgccaag 202  Q
    |||||||||||||||||||||||||| ||||||| |||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||    
T  2696454 gctattttggaaaatggattatggagttttggagttagcaaaagctgaaaattgtgaataagctgcttgcaatttcgggactaatgccaag 2696544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 112 - 214
Target Start/End: Complemental strand, 5558613 - 5558511
Alignment:
Q  112 gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttcc 211  Q
    |||||||||||||||||||||||||| |||| ||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5558613 gctattttggaaaatggattatggagttttgaagctagcaaaagctgaaaattttggataagctgcttgcaatttcgggactaatgccaaggtgagttcc 5558514  T
Q  212 ttt 214  Q
    |||    
T  5558513 ttt 5558511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 112 - 214
Target Start/End: Complemental strand, 41529235 - 41529133
Alignment:
Q  112 gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttcc 211  Q
    |||||||||||||||||||||||||| |||| ||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41529235 gctattttggaaaatggattatggagttttgaagctagcaaaagctgaaaattttggataagctgcttgcaatttcgggactaatgccaaggtgagttcc 41529136  T
Q  212 ttt 214  Q
    |||    
T  41529135 ttt 41529133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 112 - 214
Target Start/End: Original strand, 37368338 - 37368439
Alignment:
Q  112 gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttcc 211  Q
    |||||||||||||||||||||||||| |||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  37368338 gctattttggaaaatggattatggagttttgga-ctagcaaaagctgcaaattttggataagctgcttgcaatttcgggactaattccaaggtgagttcc 37368436  T
Q  212 ttt 214  Q
    |||    
T  37368437 ttt 37368439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 28035263 - 28035190
Alignment:
Q  112 gctattttggaaaatggattatggaggtttggagctagcaaaaactgcaaattgtggataagctgcttgcaatt 185  Q
    |||||||| |||||  ||||| |||| |||| ||  |||| || ||||||||||||||||||||||||||||||    
T  28035263 gctattttcgaaaagtgattacggagttttgtagaaagcagaagctgcaaattgtggataagctgcttgcaatt 28035190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University