View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15692_low_9 (Length: 224)
Name: NF15692_low_9
Description: NF15692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15692_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 23888231 - 23888031
Alignment:
| Q |
1 |
tggaaaagatgagcattggggagggatacccaataatttaaaaatatgttttgttatattactaaggatgcttttggttaaatgagttaattaggcgatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
23888231 |
tggaaaagatgagcattggggagggatacccaataatttaaaa------tatgttatgttactaaggatgcttttggttaaatgagttaattaggcgatt |
23888138 |
T |
|
| Q |
101 |
actcaatacaatcttttaaggagcttaattatgtgcttattcaatgctattatagagagtgtattgaaataagttgaaaacaactaataaacatgttata |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
23888137 |
actcaatacaatcttttaaggagcttaattaagtgcttattcaatgctattatagagagtgtattgaaataagttgaaagcaactaataaacatgtcata |
23888038 |
T |
|
| Q |
201 |
agttatt |
207 |
Q |
| |
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||||||| |
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|
| T |
23888037 |
agttatt |
23888031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 47395130 - 47395088
Alignment:
| Q |
166 |
gaaataagttgaaaacaactaataaacatgttataagttattt |
208 |
Q |
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| T |
47395130 |
gaaataagttgaaaacaacttataaacatgtagtaagttattt |
47395088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 202
Target Start/End: Original strand, 11185259 - 11185295
Alignment:
| Q |
166 |
gaaataagttgaaaacaactaataaacatgttataag |
202 |
Q |
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|||||||||||||||||||| || ||||||||||||| |
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| T |
11185259 |
gaaataagttgaaaacaacttatgaacatgttataag |
11185295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 34404105 - 34404157
Alignment:
| Q |
144 |
atgctattatagagagtgtattgaaataagttgaaaacaactaataaacatgt |
196 |
Q |
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|||||||||| ||||| ||| |||||||||||||||||||| ||| |||||| |
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| T |
34404105 |
atgctattatggagagcttatagaaataagttgaaaacaacttatatacatgt |
34404157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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