View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15693_high_1 (Length: 408)
Name: NF15693_high_1
Description: NF15693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15693_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 6584480 - 6584085
Alignment:
| Q |
1 |
aaattaatttcatatctttgaatttcacaggctgatgaagcagaaagccgtgtgaggaagtggggaggaacaattacaattgagaattaaatttcattag |
100 |
Q |
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| T |
6584480 |
aaattaatttcatatctttgaatttgacaggctgatgaagcagaaagccgtgtgaggaagtggggaggaacaatttcaattgagaattaaatttcattag |
6584381 |
T |
|
| Q |
101 |
attgaatgaacaatgaaggcaccaaattcattgcccaacttcacagtactctctgtcaagtcacattgagttgtactcaagatattattgacttggaaaa |
200 |
Q |
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| T |
6584380 |
gttgaatgaacaatgaaggcaccaaattcattgcccaacttcacattactctctgtcaagtcacattgagttgtactcaagatattattgacttggaaaa |
6584281 |
T |
|
| Q |
201 |
tctttgagattttgcggtttcaattatggattagtttagcttgttttagtttctagaaattatttaatcaatgatttgtactcttcatttttcttcaaac |
300 |
Q |
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| T |
6584280 |
tctctgagattttgcggtttcaattatggattagtttagcttgttttagtttctagaaattatttaatcaatgatttgtactcttcatttttcttcaaac |
6584181 |
T |
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| Q |
301 |
gcaataatgttgtattattttttaaacaataatattagtaatttattgttagattaatatttttcttcttcgctcatacttgaaccgtgatcttca |
396 |
Q |
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| T |
6584180 |
acaataatgttgtattattttttaaacaacaatattagtaatttattgttagattaatatttttcttctttgctcatacttgaaccgtaatcttca |
6584085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 375
Target Start/End: Complemental strand, 12005192 - 12005148
Alignment:
| Q |
331 |
aatattagtaatttattgttagattaatatttttcttcttcgctc |
375 |
Q |
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| T |
12005192 |
aatattaataattaattgttagattaatattttcctacttcgctc |
12005148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 366
Target Start/End: Complemental strand, 55417486 - 55417450
Alignment:
| Q |
331 |
aatattagtaatttatt-gttagattaatatttttct |
366 |
Q |
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| T |
55417486 |
aatattagtaatttatttgttagattaatatttttct |
55417450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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