View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15694_high_1 (Length: 941)
Name: NF15694_high_1
Description: NF15694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15694_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 427 - 928
Target Start/End: Original strand, 36946989 - 36947483
Alignment:
| Q |
427 |
gtcagaaatgctgagcaccatactagaaaacaaacgaacttggatccatttaagggacaaacatggaagacttcctcttcattacgcagcatctataggt |
526 |
Q |
| |
|
||||||||| || |||| ||||||||||||||| | || |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
36946989 |
gtcagaaatactaagcatcatactagaaaacaagccaatttggatccatttaagggacaaagatggaaggcttcctcttcattacgcagcatctataggt |
36947088 |
T |
|
| Q |
527 |
taccttgaaggtgttgaattattacttgacaaatgcaaatgctgcacaattcaaagtgatgacatatatatatggctcttttccaattcatttagcatct |
626 |
Q |
| |
|
||||||||||||||| | |||||||||| || |||||||||||||||||||||||| || || ||| |||| | ||| ||||||||| |||||||| |
|
|
| T |
36947089 |
taccttgaaggtgtttatttattacttggcacatgcaaatgctgcacaattcaaaggga---ca---ata-atggttatttcccaattcatctagcatct |
36947181 |
T |
|
| Q |
627 |
tctggtggccatgtggaagtagtgaagaagttgttagaatattgtccagatcccagagagatgcttgacacttttcttcaacaaaatattcttcacattg |
726 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36947182 |
tatggtggccatgtggaagtagtgaagaagttgttggaatattgtcctgatcccagagagatgctcgacacttttcttcaacaaaatattcttcacattg |
36947281 |
T |
|
| Q |
727 |
cagcatatcatggaaaacatgatgtgatacgctacatactagaaaatgaagttcatgaacaccgtcagatgataaatcagaaagataggaatggagacac |
826 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||| |||||| ||||| |||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
36947282 |
cagcaagcaatggaaaacatgacgtgatacgctacatacttgaaaatcaagttggtgaacaccgtcagatgataaatcaagaagataggaatggaaacac |
36947381 |
T |
|
| Q |
827 |
acctttgcatttggctgcaagaaaatgtcatcccacaactgtgttctacttgattaaccaaaataacgaaaaagtacatcttgatatggttaaccagaat |
926 |
Q |
| |
|
||||||||||||||| ||| | ||||||||| ||||||||| |||| | ||||||||||||| |||||||| ||||| ||||| |||||||||||| |
|
|
| T |
36947382 |
ccctttgcatttggcttcaacattttgtcatcccgcaactgtgtactacatagttaaccaaaataaggaaaaagtgcatctagatattgttaaccagaat |
36947481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 294
Target Start/End: Original strand, 36963954 - 36964227
Alignment:
| Q |
17 |
atgttacatgaggcaatgttatgtggtgacattaagagaattggcggggacaagattttcaaagtttgtgaactttacaagactgtagatcgatcggttc |
116 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
36963954 |
atgttacatgaggcaatgttttgtggtgagattaagagaattggcggggacaagattttcaaagtttgtgaactttacaagactatagatc----ggttc |
36964049 |
T |
|
| Q |
117 |
gggaattcattatcagattgttgttatggatttgcattagatattgctaatcttgcaaagaaatctgtaatttaccttgcggttgaaaataaggacaagg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36964050 |
gggaattcattatcagattgttgttatggatttgcattagatattgctaatcttgcaaggaaatctgtaatttaccttgcggttgaaaataaggacaagg |
36964149 |
T |
|
| Q |
217 |
atgcagtcaaactaatcttggagaattgccctaagaatgatgctaagccggagggattatcggctgttgtagaagcta |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
36964150 |
atgcagtcaaactaatcttggagaattgccctaagaatgatgctaagccggagggattatcgcctgttgtagaagcta |
36964227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 427 - 638
Target Start/End: Original strand, 36964550 - 36964757
Alignment:
| Q |
427 |
gtcagaaatgctgagcaccatactagaaaacaaacgaacttggatccatttaagggacaaacatggaagacttcctcttcattacgcagcatctataggt |
526 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
36964550 |
gtcagaaatgctgagcaccatactagaaaacaaacgaacttggatccatttaagggacaaacatggaagacttcctcttcattacgcagtatctataggt |
36964649 |
T |
|
| Q |
527 |
taccttgaaggtgttgaattattacttgacaaatgcaaatgctgcacaattcaaagtgatgacatatatatatggctcttttccaattcatttagcatct |
626 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36964650 |
taccttgaaggtgttgaattattacttggcatatgcaaatgctgcacaattcaaagtgatgac----atatatggctcttttccaattcatttagcatct |
36964745 |
T |
|
| Q |
627 |
tctggtggccat |
638 |
Q |
| |
|
|||||||||||| |
|
|
| T |
36964746 |
tctggtggccat |
36964757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 421 - 888
Target Start/End: Original strand, 36953417 - 36953877
Alignment:
| Q |
421 |
ttattagtcagaaatgctgagcaccatactagaaaacaaacgaacttggatccatttaagggacaaacatggaagacttcctcttcattacgcagcatct |
520 |
Q |
| |
|
||||| |||||||||||| | |||||||||| ||||||| | ||||| |||||||| || ||||||||||| || |||||||||||||||||| | || |
|
|
| T |
36953417 |
ttatttgtcagaaatgcttaacaccatactaaaaaacaagccaacttagatccattcaatggacaaacatgaaatgcttcctcttcattacgcatcgact |
36953516 |
T |
|
| Q |
521 |
ataggttaccttgaaggtgttgaattattacttgacaaatgcaaatgctgcacaattcaaagtgatgacatatatatatggctcttttccaattcattta |
620 |
Q |
| |
|
||||||||||||||||| |||| |||| |||| | || ||||| ||||| |||||||| || | |||||| | ||| ||||||||| || |
|
|
| T |
36953517 |
ataggttaccttgaaggcgttgttcaattaattgaaatgtgtaaatgttgcaccattcaaagggacaa-------atatggttatttcccaattcatcta |
36953609 |
T |
|
| Q |
621 |
gcatcttctggtggccatgtggaagtagtgaagaagttgttagaatattgtccagatcccagagagatgcttgacacttttcttcaacaaaatattcttc |
720 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||| || | | | |||||||||| |
|
|
| T |
36953610 |
gcatcgtatggtggccatgtggaagtagtgaagaagttgttggaatattgtcctgatcccacagagatgcttgacacttctcatgagcgtaatattcttc |
36953709 |
T |
|
| Q |
721 |
acattgcagcatatcatggaaaacatgatgtgatacgctacatactagaaaatgaagttcatgaacaccgtcagatgataaatcagaaagataggaatgg |
820 |
Q |
| |
|
|||||||| || | |||||||| |||| ||| | | ||||| ||| ||| | || | ||||| | ||||||||||||| ||||||| || || |
|
|
| T |
36953710 |
acattgcatcaaactatggaaaatatgaggtggtgcaatacattctacaaagtcaaagtagtgaacgttataagatgataaatcaaaaagataataaagg |
36953809 |
T |
|
| Q |
821 |
agacacacctttgcatttggctgcaagaaaatgtcatcccacaactgtgttctacttgattaaccaaa |
888 |
Q |
| |
|
||| || |||||||||||||| |||||| ||||||||| | |||||||| |||||| ||||||||| |
|
|
| T |
36953810 |
agatacccctttgcatttggcagcaagatcatgtcatcctagaactgtgtactacttagttaaccaaa |
36953877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 134 - 316
Target Start/End: Original strand, 36946738 - 36946920
Alignment:
| Q |
134 |
ttgttgttatggatttgcattagatattgctaatcttgcaaagaaatctgtaatttaccttgcggttgaaaataaggacaaggatgcagtcaaactaatc |
233 |
Q |
| |
|
||||||||||| |||||| ||||| || | |||| |||||||||||| ||| |||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
36946738 |
ttgttgttatgaatttgcgttagaaatggttaattatgcaaagaaatcagtactttaccttgcggttgaaaatggggacgaggatgcagtcaaactaatc |
36946837 |
T |
|
| Q |
234 |
ttggagaattgccctaagaatgatgctaagccggagggattatcggctgttgtagaagctatcatgaagcagaatcaaggtat |
316 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| ||||||||||| | |||||| ||| |||||||| |||||||||||||| |
|
|
| T |
36946838 |
ttagagaattgccctaagaatgatgctaagccgaagggattatcgcccattgtagcagcaatcatgaaacagaatcaaggtat |
36946920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 293 - 392
Target Start/End: Original strand, 36964373 - 36964472
Alignment:
| Q |
293 |
tatcatgaagcagaatcaaggtatgtaagttgatcataatatatcatgcaaactgtcattatattatgcctccaagattatatctaaaactttcacttaa |
392 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36964373 |
tatcatgaagcaaaatcaaggtatgtaagttgatcataatatatcatgcaaactgtcattatattatgcctccaaggttatatctaaaactttcacttaa |
36964472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 463 - 748
Target Start/End: Complemental strand, 37080814 - 37080536
Alignment:
| Q |
463 |
aacttggatccatttaagggacaaacatggaagacttcctcttcattacgcagcatctataggttaccttgaaggtgttgaattattacttgacaaatgc |
562 |
Q |
| |
|
||||||||| ||||||| |||| | || ||| ||||| |||||||| |||||||||||||||||||||| |||||||| | ||| || |||||| |
|
|
| T |
37080814 |
aacttggatacatttaacagacacatataaaaggcttccacttcattatgcagcatctataggttaccttgtaggtgttgtttatttaactggcaaatgt |
37080715 |
T |
|
| Q |
563 |
aaatgctgcacaattcaaagtgatgacatatatatatggctcttttccaattcatttagcatcttctggtggccatgtggaagtagtgaagaagttgtta |
662 |
Q |
| |
|
||||| ||||| | |||||| || | |||||||| ||| ||||||||| ||||||| | ||||||||||||||||||||| ||||||||||| |
|
|
| T |
37080714 |
aaatgttgcaccaatcaaagggacaa-------atatggctatttcccaattcatctagcatcatatggtggccatgtggaagtagtagagaagttgtta |
37080622 |
T |
|
| Q |
663 |
gaatattgtccagatcccagagagatgcttgacacttttcttcaacaaaatattcttcacattgcagcatatcatggaaaacatga |
748 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||| || | | ||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
37080621 |
gaatactgtccagatcccacagagatgcttgacacttcatttaagcgtaatattcttcatgttgcagcatacaatggaaaacatga |
37080536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 463 - 699
Target Start/End: Complemental strand, 37070981 - 37070752
Alignment:
| Q |
463 |
aacttggatccatttaagggacaaacatggaagacttcctcttcattacgcagcatctataggttaccttgaaggtgttgaattattacttgacaaatgc |
562 |
Q |
| |
|
||||||||| |||| || ||||| | ||| ||| ||||| |||||||| ||||||||||||||||||||| |||| |||||||||||||||| || ||| |
|
|
| T |
37070981 |
aacttggatacattcaacggacacatatgaaaggcttccacttcattatgcagcatctataggttaccttaaaggcgttgaattattacttggcatatgt |
37070882 |
T |
|
| Q |
563 |
aaatgctgcacaattcaaagtgatgacatatatatatggctcttttccaattcatttagcatcttctggtggccatgtggaagtagtgaagaagttgtta |
662 |
Q |
| |
|
||||| ||||| | |||||| | | | |||||||| ||| |||||||| |||||||| ||| ||||| || |||| || |||||||||||| |
|
|
| T |
37070881 |
aaatgttgcaccaatcaaaggg-------acaaatatggctatttctcaattcatctagcatctcatggaggccacttgaaagtggtaaagaagttgtta |
37070789 |
T |
|
| Q |
663 |
gaatattgtccagatcccagagagatgcttgacactt |
699 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
37070788 |
gaatactgtccagatcccactgagatgcttgacactt |
37070752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 17 - 315
Target Start/End: Complemental strand, 37081452 - 37081170
Alignment:
| Q |
17 |
atgttacatgaggcaatgttatgtggtgacattaagagaattggcggggacaagattttcaaagtttgtgaactttacaagactgtagatcgatcggttc |
116 |
Q |
| |
|
||||| |||||||||||||||||| |||||| ||||||||||| ||||| ||||||||||||| |||||| || || || | || |
|
|
| T |
37081452 |
atgtttcatgaggcaatgttatgtcgtgacaagaagagaattggtggggataagattttcaaagcttgtgagctctataaaa----------------tc |
37081369 |
T |
|
| Q |
117 |
gggaattcattatcagattgttgttatggatttgcattagatattgctaatcttgcaaagaaatctgtaatttaccttgcggttgaaaataaggacaagg |
216 |
Q |
| |
|
||| |||||| ||| | || ||||||| | ||||||||| || || ||| | |||||| |||| || |||||||||| ||||||||| |||||||| |
|
|
| T |
37081368 |
ggggattcatcgtcaaagtggtgttatgaaattgcattagttaatgttaaccatgcaaaacaatcaatactttaccttgcagttgaaaatggggacaagg |
37081269 |
T |
|
| Q |
217 |
atgcagtcaaactaatcttggagaattgccctaagaatgatgctaagccggagggattatcggctgttgtagaagctatcatgaagcagaatcaaggta |
315 |
Q |
| |
|
| ||||||||| ||||| ||| |||| |||| || |||| ||||||||| || |||||||| | ||||||| ||| |||||||||||||||||||||| |
|
|
| T |
37081268 |
aagcagtcaaagtaatcatggcgaatcgccccaacaatgttgctaagccagaaggattatcacccgttgtagcagcaatcatgaagcagaatcaaggta |
37081170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 37071611 - 37071530
Alignment:
| Q |
17 |
atgttacatgaggcaatgttatgtggtgacattaagagaattggcggggacaagattttcaaagtttgtgaactttacaaga |
98 |
Q |
| |
|
||||| |||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||| |||||| || ||||||| |
|
|
| T |
37071611 |
atgtttcatgaggcaatgttatgtcgtgacaagaagagaattggcggggataagattttcaaagcttgtgagctctacaaga |
37071530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 135 - 320
Target Start/End: Original strand, 36952647 - 36952835
Alignment:
| Q |
135 |
tgttgttatggatttgcattagatattgctaatcttgcaaagaaatctgtaatttaccttgcggttgaaaataaggacaaggatgcagtcaaactaatct |
234 |
Q |
| |
|
|||||||||| || ||| ||||| |||| ||||| |||||||||||| ||| |||| |||||||| || ||| ||| |||||| |||| | ||||||| |
|
|
| T |
36952647 |
tgttgttatgaatatgcgttagaaattgttaatcatgcaaagaaatcggtactttatcttgcggtcgagaatggggaagaggatgtagtccagctaatct |
36952746 |
T |
|
| Q |
235 |
tggagaattgccctaa---gaatgatgctaagccggagggattatcggctgttgtagaagctatcatgaagcagaatcaaggtatgtaa |
320 |
Q |
| |
|
|||||||||||| || ||||| || ||||| |||| ||||| ||||||||| ||| ||| |||||| |||||||||||||||| |
|
|
| T |
36952747 |
tggagaattgcctcaacagcaatgaagccaagccaaaggggttatcacctgttgtagcagcaatcttgaagcggaatcaaggtatgtaa |
36952835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 178; Significance: 2e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 427 - 888
Target Start/End: Complemental strand, 12494823 - 12494369
Alignment:
| Q |
427 |
gtcagaaatgctgagcaccatactagaaaacaaacgaacttggatccatttaagggacaaacatggaagacttcctcttcattacgcagcatctataggt |
526 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||| ||||||| |||||| |||||||||||||| ||| ||||| |||||||||||||||||||||||| |
|
|
| T |
12494823 |
gtcagaaatgctcagcaccatattagaaaacaaaccaacttgggtccattcaagggacaaacatgaaaggcttccacttcattacgcagcatctataggt |
12494724 |
T |
|
| Q |
527 |
taccttgaaggtgttgaattattacttgacaaatgcaaatgctgcacaattcaaagtgatgacatatatatatggctcttttccaattcatttagcatct |
626 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| || ||| | | ||| ||||||||| ||||||| |
|
|
| T |
12494723 |
taccttgaaggtgttgaattattaattgacaaatgcaaatgctgcacaattcaaag---ggacaaat-tat---gttatttcccaattcatgtagcatca |
12494631 |
T |
|
| Q |
627 |
tctggtggccatgtggaagtagtgaagaagttgttagaatattgtccagatcccagagagatgcttgacacttttcttcaacaaaatattcttcacattg |
726 |
Q |
| |
|
| |||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||| || | ||| ||||||||||| ||| |
|
|
| T |
12494630 |
tatggtggccatgtggaagtagtgaaaaagttgttagaatattgtcctgatcccacagagatgcttgacacttctcataaacgtaatattcttcatgttg |
12494531 |
T |
|
| Q |
727 |
cagcatatcatggaaaacatgatgtgatacgctacatactagaaaatgaagttcatgaacaccgtcagatgataaatcagaaagataggaatggagacac |
826 |
Q |
| |
|
|| || | |||||||| |||| ||| | | ||||| ||| ||| | || ||| || || | ||||||||||||| ||||||| || ||||| || |
|
|
| T |
12494530 |
catcaaaatatggaaaatatgaggtggtgcaatacattctacaaagtcaaattcctggacttgataagatgataaatcaaaaagataataaaggagatac |
12494431 |
T |
|
| Q |
827 |
acctttgcatttggctgcaagaaaatgtcatcccacaactgtgttctacttgattaaccaaa |
888 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| |||||||||| |||||| ||||||||| |
|
|
| T |
12494430 |
ccctttgcatttggctgcgagatcatgtcatcctacaactgtgtactacttagttaaccaaa |
12494369 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 137 - 307
Target Start/End: Complemental strand, 12495386 - 12495219
Alignment:
| Q |
137 |
ttgttatggatttgcattagatattgctaatcttgcaaagaaatctgtaatttaccttgcggttgaaaataaggacaaggatgcagtcaaactaatcttg |
236 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| ||||||| |||| ||| ||| |||||| |||| ||| |||||||||||||||| ||||||||||| |
|
|
| T |
12495386 |
ttgttatgaatttgcattagatattattaatcatgcaaaggaatcggtacttttccttgctgttgtaaaaggggacaaggatgcagtcgaactaatcttg |
12495287 |
T |
|
| Q |
237 |
gagaattgccctaagaatgatgctaagccggagggattatcggctgttgtagaagctatcatgaagcagaa |
307 |
Q |
| |
|
| |||||||| ||| ||| ||||||||||||||| ||| | |||| || ||||||| ||| |||||| |
|
|
| T |
12495286 |
aaaaattgcccccaga---atgttaagccggagggattgtcgcccgttggagcagctatcctgatgcagaa |
12495219 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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