View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15694_high_12 (Length: 379)
Name: NF15694_high_12
Description: NF15694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15694_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 31437088 - 31437448
Alignment:
| Q |
1 |
tttcttccaagtcactcaatggaacacttccttccgatctcaactcgctctcccaactcaccgccctctttcttcagtccaactctctttctggcgcatt |
100 |
Q |
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| T |
31437088 |
tttcttccaagtcactcaatggaacacttccttccgatctcaactcgctctcccaactcacctccctctttcttcagtccaactctctttctggcgcatt |
31437187 |
T |
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| Q |
101 |
accatcactcgctaacctcgccttgcttcaaacggtttcccttggccaaaacaacttcttatcagttcctgttggctgcttcaaaggactcactgacctc |
200 |
Q |
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| T |
31437188 |
accatcactcgctaacctcgccttgcttcaaacggtttcccttggccaaaacaacttcttatcagttcctgttggctgcttcaaaggactcactgacctc |
31437287 |
T |
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| Q |
201 |
caaacactctccatgagtttcaacaatgaccttgctccatggacgtttccaacagacttggctgagtcttccagcctagtctcacttgaccttggaggta |
300 |
Q |
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| T |
31437288 |
caaacactctccatgagtttcaacaatgaccttgctccatggacgtttccaacagacttggctgagtcttccagcctagtctcacttgaccttggaggta |
31437387 |
T |
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| Q |
301 |
ccaatctcgagggttccctgcccgatatatttgattctttagtcaatttgcaggagcttcg |
361 |
Q |
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| T |
31437388 |
ccaatctcgagggttccctgcccgatatatttgattctttagtcaatttgcaggagcttcg |
31437448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 38162084 - 38161951
Alignment:
| Q |
12 |
tcactcaatggaacacttccttccgatctcaactcgctctcccaactcaccgccctctttcttcagtccaactctctttctggcgcattaccatcactcg |
111 |
Q |
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| T |
38162084 |
tcactcaccggaacattaccttccgatctgaactcactctctcagctcactacactttctcttcaatccaactcactcaccggcgcgttgccttctctcg |
38161985 |
T |
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| Q |
112 |
ctaacctcgccttgcttcaaacggtttcccttgg |
145 |
Q |
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| T |
38161984 |
cgaacctcaccatgcttcaaacggttttccttgg |
38161951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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