View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15694_high_25 (Length: 232)
Name: NF15694_high_25
Description: NF15694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15694_high_25 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 22 - 214
Target Start/End: Original strand, 44262304 - 44262496
Alignment:
| Q |
22 |
gctaagagaggttagactttaaagtgtttctatatcattggatattgtaccacagagattcttgtgagagagatcaagcttctttacatttccatctgag |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44262304 |
gctaagagaggttagactttaaagtgtttctatatcattggatattgaaccactgagattcttgtgagagagatcaagcttctttacatttccatctgag |
44262403 |
T |
|
| Q |
122 |
ttgcatttgatgctagtccagttacaatgagctgaatcacttcctaatgccaattttcaatcatgaagattgaagagtgttgaaaggatcaac |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44262404 |
ttgcatttgatgctagtccagttacaatgagctgaatcacttcctaatgccaattttcaatcatgaagattgaagagtgttgaaaggatcaac |
44262496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 153
Target Start/End: Original strand, 39470331 - 39470460
Alignment:
| Q |
24 |
taagagaggttagactttaaagtgtttctatatcattggatattgtaccacagagattcttgtgagagagatcaagcttctttacatttccatctgagtt |
123 |
Q |
| |
|
||||||| || ||| ||| |||| ||| ||||||| ||||| | |||||| |||||||||||||||||||||||| |||| ||| ||||| | ||||| |
|
|
| T |
39470331 |
taagagaagtaagattttgaagtctttgtatatcaccggatactataccactgagattcttgtgagagagatcaaggttctccacagttccagccgagtt |
39470430 |
T |
|
| Q |
124 |
gcatttgatgctagtccagttacaatgagc |
153 |
Q |
| |
|
||||| ||| | ||||||||||||||||| |
|
|
| T |
39470431 |
gcattcgattccggtccagttacaatgagc |
39470460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 154
Target Start/End: Complemental strand, 30087567 - 30087490
Alignment:
| Q |
77 |
agattcttgtgagagagatcaagcttctttacatttccatctgagttgcatttgatgctagtccagttacaatgagct |
154 |
Q |
| |
|
|||||| |||| ||||||| |||||||| |||| |||| |||||||||| | || | ||||||||||||||||||| |
|
|
| T |
30087567 |
agattcatgtgtgagagattaagcttctctacagctccagctgagttgcactggacaccagtccagttacaatgagct |
30087490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University