View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15694_high_28 (Length: 217)
Name: NF15694_high_28
Description: NF15694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15694_high_28 |
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| [»] scaffold0050 (2 HSPs) |
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Alignment Details
Target: scaffold0050 (Bit Score: 125; Significance: 1e-64; HSPs: 2)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 58 - 206
Target Start/End: Original strand, 8218 - 8365
Alignment:
| Q |
58 |
gatatgcaaatgttaattgttagtaagttgttcgagggaaggggataatgttagttttcatttatcaaacctggaacctctgacttaaatcttctttaat |
157 |
Q |
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| T |
8218 |
gataggcaaatgttaattgttagtaagttgttcaagggaaggggataatgttagttttcattgatcaaatctggaacctctgacttaaatcttcttt-at |
8316 |
T |
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| Q |
158 |
tgaaaaccataactattatttcatttatttgcattcctacctatttcat |
206 |
Q |
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| T |
8317 |
tgaaaaccataactattatttcatttatttgcattcctacctatttcat |
8365 |
T |
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Target: scaffold0050; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 8161 - 8199
Alignment:
| Q |
1 |
taaaaatttcttccactcattcatttcaccttagttatg |
39 |
Q |
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| T |
8161 |
taaaaatttcttccactcattcatttcacctttgttatg |
8199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 208
Target Start/End: Original strand, 29500631 - 29500739
Alignment:
| Q |
99 |
gggataatgttagttttcatttatcaaacctggaacctctgacttaaatcttctttaattgaaaaccataactattatttcatttatttgcattcctacc |
198 |
Q |
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| T |
29500631 |
gggaaaatgttagttttcatggatcaaacgtggaacttgtgactttaatattttttatttg-aaataataaccattattttctttatttgcctttctaca |
29500729 |
T |
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| Q |
199 |
tatttcatct |
208 |
Q |
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| T |
29500730 |
tatttcatct |
29500739 |
T |
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