View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15694_high_3 (Length: 570)

Name: NF15694_high_3
Description: NF15694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15694_high_3
NF15694_high_3
[»] chr1 (3 HSPs)
chr1 (18-295)||(24817910-24818187)
chr1 (311-551)||(24817552-24817792)
chr1 (311-551)||(24800476-24800716)
[»] chr7 (2 HSPs)
chr7 (365-522)||(41876111-41876266)
chr7 (20-259)||(41875511-41875750)
[»] chr8 (2 HSPs)
chr8 (365-495)||(40867826-40867955)
chr8 (20-81)||(40868651-40868712)


Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 24818187 - 24817910
Alignment:
Q  18 acaatcagcgggaaccatgctgctgcattatctttggcagcaaagataagggggatccctgcatttattgtggttccgaaaagtgcaccatcttgtaaag 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24818187 acaatcagtgggaaccatgctgctgcattatctttggcagcaaagataagggggatccctgcatttattgtggttccgaaaagtgcaccatcttgtaaag 24818088  T
Q  118 ttgaaaatattaagaggtacgatggaaacgttaatttggctgaggataatatgcagtcaagagaagaagttatgaacaaagtgaggcaagaaacaattgc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  24818087 ttgaaaatattaagaggtacgatggaaacgttaatttggctgaggataatatgcagtcaagagaagaagttatgaacaaagtgaggcaagaaacaagtgc 24817988  T
Q  218 tatctatataccttcttcaaatgatggccgcataatgaggtataatatcgtgttttaacatttttgtggtaatagctt 295  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  24817987 tatctatataccttcttcaaatgatggccgcataatgaggtagaatatcgtgttttaacatttttgtgctaatagctt 24817910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 311 - 551
Target Start/End: Complemental strand, 24817792 - 24817552
Alignment:
Q  311 acttatttatatacttctcttt-gctctttgacatgtttgctggttgatctttatagtggccaaggtaccatatccttggagtttcttgaacaaatccct 409  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24817792 acttatttatatacttctcttttgctctttgacatgtttgctggttgatctt-atagtggccaaggtaccatatccttggagtttcttgaacaaatccct 24817694  T
Q  410 caaatcgatacacttttagtaccaataagtggtttgttctctcttttttacgtcaatccatcatcaaaatgtttcacaatttgcatataatttagtatcc 509  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24817693 caaatcgatacacttgtagtaccaataagtggtttgttctctcttttttacgtcaatccatcatcaaaatgtttcacaatttgcatataatttagtatcc 24817594  T
Q  510 tcttatcgattttgttacaaaatgatacctgcaggcggcggt 551  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  24817593 tcttatcgattttgttacaaaatgatacttgcaggcggcggt 24817552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 311 - 551
Target Start/End: Complemental strand, 24800716 - 24800476
Alignment:
Q  311 acttatttatatacttctcttt-gctctttgacatgtttgctggttgatctttatagtggccaaggtaccatatccttggagtttcttgaacaaatccct 409  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24800716 acttatttatatacttctcttttgctctttgacatgtttgctggttgatctt-atagtggccaaggtaccatatccttggagtttcttgaacaaatccct 24800618  T
Q  410 caaatcgatacacttttagtaccaataagtggtttgttctctcttttttacgtcaatccatcatcaaaatgtttcacaatttgcatataatttagtatcc 509  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24800617 caaatcgatacacttgtagtaccaataagtggtttgttctctcttttttacgtcaatccatcatcaaaatgtttcacaatttgcatataatttagtatcc 24800518  T
Q  510 tcttatcgattttgttacaaaatgatacctgcaggcggcggt 551  Q
    |||||||||||||||||||||||||||| |||||| ||||||    
T  24800517 tcttatcgattttgttacaaaatgatacttgcaggtggcggt 24800476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 365 - 522
Target Start/End: Original strand, 41876111 - 41876266
Alignment:
Q  365 agtggccaaggtaccatatccttggagtttcttgaacaaatccctcaaatcgatacacttttagtaccaataagtggtttgttctctcttttttacgtca 464  Q
    ||||||||||||||||||||||||||| || | ||||||  |||||| || ||||| ||| ||||||| |||||||||||||  |||| |||||| || |    
T  41876111 agtggccaaggtaccatatccttggagcttttggaacaagcccctcagattgatactcttgtagtacctataagtggtttgt--tctcatttttatgtta 41876208  T
Q  465 atccatcatcaaaatgtttcacaatttgcatataatttagtatcctcttatcgatttt 522  Q
    |||||||| | |||||||| | ||||| |||| | |||||||| ||||| ||||||||    
T  41876209 atccatcaaccaaatgttttaaaattttcataaattttagtattctcttctcgatttt 41876266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 259
Target Start/End: Original strand, 41875511 - 41875750
Alignment:
Q  20 aatcagcgggaaccatgctgctgcattatctttggcagcaaagataagggggatccctgcatttattgtggttccgaaaagtgcaccatcttgtaaagtt 119  Q
    |||||| || || ||||||||||||||  |||||||||||||  ||||||| ||||||||||   ||||   ||| |||| ||  |||  ||||||| ||    
T  41875511 aatcagtggaaatcatgctgctgcattggctttggcagcaaaactaaggggaatccctgcatacgttgttactccaaaaaatgtgccaatttgtaaactt 41875610  T
Q  120 gaaaatattaagaggtacgatggaaacgttaatttggctgaggataatatgcagtcaagagaagaagttatgaacaaagtgaggcaagaaacaattgcta 219  Q
    || ||| |||||||||| ||||| || ||||| ||  ||||||  || ||   ||||||||| ||||||  | | | | |  | ||||||||   |||||    
T  41875611 gagaatgttaagaggtatgatggtaaggttaacttttctgaggccaacataaggtcaagagatgaagttgcgtatatattacgacaagaaaccggtgcta 41875710  T
Q  220 tctatataccttcttcaaatgatggccgcataatgaggta 259  Q
    | | |||||||||||| ||||||||||||||| |||||||    
T  41875711 tatttataccttcttctaatgatggccgcatactgaggta 41875750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 365 - 495
Target Start/End: Complemental strand, 40867955 - 40867826
Alignment:
Q  365 agtggccaaggtaccatatccttggagtttcttgaacaaatccctcaaatcgatacacttttagtaccaataagtggtttgttctctcttttttacgtca 464  Q
    |||||||| |||||||||||||||||| |||| ||||||  ||||||| | ||||||||| | |||||||||||||||||||  |  |||||| | ||||    
T  40867955 agtggccagggtaccatatccttggagcttctggaacaagcccctcaactagatacacttgtggtaccaataagtggtttgt--ttgctttttgatgtca 40867858  T
Q  465 atccatcat-caaaatgtttcacaatttgcat 495  Q
    | ||||||| |||||||||||| |||||||||    
T  40867857 aaccatcatccaaaatgtttcaaaatttgcat 40867826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 40868712 - 40868651
Alignment:
Q  20 aatcagcgggaaccatgctgctgcattatctttggcagcaaagataagggggatccctgcat 81  Q
    |||||| || |||||||||||||||||  || ||||||||||  || |||||||||||||||    
T  40868712 aatcagtggaaaccatgctgctgcattggctctggcagcaaaactacgggggatccctgcat 40868651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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