View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15694_high_4 (Length: 536)
Name: NF15694_high_4
Description: NF15694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15694_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Original strand, 39345964 - 39346490
Alignment:
| Q |
1 |
ctaacggtggaggcggaggtggaggaaattggggtggttcaactacacctaggaatggagatgttgaggttgcaactcaatcaccaaaaggtgttggtgc |
100 |
Q |
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| T |
39345964 |
ctaacggtggaggcggaggtggaggaaattggggtggttcaactacacctaggaatggagatgttgaggttgcaactcaatcaccaaaaggtgttggtgc |
39346063 |
T |
|
| Q |
101 |
tgctcaattgaatagggtatcttctgttgcctcacatgaaagtgaattgccattggcaaaatcaatgagatcgtgacatgacatgattttcgttgaaatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39346064 |
tgctcaattgaatagggtatcttctgttgcctcacatgaaagtgaattgccattggcaaaatcaatgagatcgtgacatgacatgattttcattgaaatt |
39346163 |
T |
|
| Q |
201 |
ttgttccttcttgttgatgctctcattttttggggtgccctatgtgatacataataatcatctaattaattggtgatggctctaactcaaaatgcttgaa |
300 |
Q |
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| T |
39346164 |
ttgttccttcttgttgatgctctcattttttggggtgccctatgtgatacataataatcatctaattaattggtgatggctctaactcaaaatgcttgaa |
39346263 |
T |
|
| Q |
301 |
ctattctataatcacatcatcaatgcatttgcacctcatgaatatataggccttgtttaggtatacatgaatgctctacgtatattcaatgacatgatag |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39346264 |
ctattctataatcacatcatcaatgcatttgcacctcatgaatatataggccttgttgagggatacatgaatgctctacgtatattcaatgacatgatag |
39346363 |
T |
|
| Q |
401 |
gccttgttctctaaaacttctcttctatataactctattaggagatatttcatacagacttgtataaagaaatggtaatttgatgattcaagtctcacta |
500 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39346364 |
gccttgttctctaaaacttcttttctatataactctattaggagatatttcatacagacttgtataaagaaatgataatttgatgattcaagtctcacta |
39346463 |
T |
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| Q |
501 |
gttttttattttgtagttttcttcatc |
527 |
Q |
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| T |
39346464 |
gttttagattttgtagttttcttcatc |
39346490 |
T |
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