View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15694_high_8 (Length: 450)
Name: NF15694_high_8
Description: NF15694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15694_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 43861992 - 43861553
Alignment:
| Q |
1 |
atcaacatcatcttcataaatttgatacgttagtaataattaatgataataattaagcaaagtactaatgattaattcaagagatgaatgagccaaacct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43861992 |
atcaacatcatcttcataaatttgatacgttagtagtaattaatgataataattaagcaaagtactaatgattaattcaagagatgaatgagccaaacct |
43861893 |
T |
|
| Q |
101 |
tgtttgtccttgttcgaatcagccaactttcttttatggaactccttagtctttctgcgataagccaaagcagcttcatactcggtatcatgagtaccaa |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43861892 |
tgtttgtccttgttcgaatcagctaactttcttttatggaactccttagtctttctgcgataagccaaagcagcttcatactcggtatcatgagtaccaa |
43861793 |
T |
|
| Q |
201 |
ggtactcagttgtcttttcaaatggatttctaatctgagctgcatatctttcctttttcccacggaggcgccgaacacctttgtaaatgcttgtggaaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43861792 |
ggtactcagttgtcttttcaaatggatttctaatctgagctgcatatctttccttgttcccacggaggcgccgaaaacctttgtaaatgcttgtggaaaa |
43861693 |
T |
|
| Q |
301 |
ccttctccacaatccttgtttttgaggaagctttttaactatttccggatttggttgcacaaactcacacaaaattctcttaggtggtaatggctttgag |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
43861692 |
ccttctccacaatccttgtttttgaggaagctttttaactatttctggatttggttgcacaaactcacacaaaattctcttaggtagtaatggttttgag |
43861593 |
T |
|
| Q |
401 |
ggattaggtttttgaacttgttcatcacttgaactctctg |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43861592 |
ggattaggtttttgaacttgttcatcacttgaactctctg |
43861553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University