View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15694_low_15 (Length: 367)

Name: NF15694_low_15
Description: NF15694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15694_low_15
NF15694_low_15
[»] chr6 (12 HSPs)
chr6 (12-352)||(33305140-33305480)
chr6 (20-335)||(33286219-33286534)
chr6 (28-352)||(33263291-33263618)
chr6 (100-351)||(31561987-31562238)
chr6 (100-256)||(33401373-33401529)
chr6 (14-342)||(9167433-9167755)
chr6 (134-314)||(33058255-33058438)
chr6 (20-342)||(33272468-33272788)
chr6 (145-280)||(33359444-33359579)
chr6 (28-283)||(33388770-33389022)
chr6 (28-269)||(33643711-33643956)
chr6 (150-247)||(33410701-33410798)
[»] chr2 (1 HSPs)
chr2 (100-314)||(17440001-17440216)
[»] scaffold1408 (1 HSPs)
scaffold1408 (102-252)||(1385-1535)
[»] scaffold0428 (1 HSPs)
scaffold0428 (102-252)||(7131-7281)
[»] chr4 (8 HSPs)
chr4 (100-255)||(31503304-31503459)
chr4 (100-166)||(31498070-31498136)
chr4 (134-250)||(31157992-31158108)
chr4 (116-193)||(31478170-31478247)
chr4 (134-191)||(31484023-31484080)
chr4 (109-193)||(31527234-31527318)
chr4 (134-193)||(31149175-31149234)
chr4 (212-250)||(31491076-31491114)


Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 12 - 352
Target Start/End: Complemental strand, 33305480 - 33305140
Alignment:
Q  12 atgaacgctgaacacgtgtcaaaaatgaataatcttagattcctcatcttcaagtacggtgggtgcatctcaggaagtccatggagtttttcaaacaaat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33305480 atgaacgctgaacacgtgtcaaaaatgaataatcttagattcctcatcttcaagtacggtgggtgcatctcaggaagtccatggagtttttcaaacaaat 33305381  T
Q  112 taaaatatgttgattggcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagagcagcaaaattga 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33305380 taaaatatgttgattggcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagagcagcaaaattga 33305281  T
Q  212 acaactatggacaaacaagaaggtactataaattctcttattattaatgtttatcttagaaatataaacaaaattgaaacaattatctcatagtcaaagt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33305280 acaactatggacaaacaagaaggtactataaattctcttattattaatgtttatcttagaaatataaacaaaattgaaacaattatctcatagtcaaagt 33305181  T
Q  312 aattggtgtatttttgtttgttttacatgtcccagtatctg 352  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  33305180 aattggtgtatttttgtttgttttacatgtcccagtatctg 33305140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 20 - 335
Target Start/End: Complemental strand, 33286534 - 33286219
Alignment:
Q  20 tgaacacgtgtcaaaaatgaataatcttagattcctcatcttcaagtacggtgggtgcatctcaggaagtccatggagtttttcaaacaaattaaaatat 119  Q
    ||||||| |||||||||||| |||||||||||| |||||| ||| ||  |||| |   ||||| ||||| | || |||| ||||||||||||||| ||||    
T  33286534 tgaacacttgtcaaaaatgagtaatcttagattgctcatcatcatgtggggtgtgaatatctccggaagcctattgagtctttcaaacaaattaagatat 33286435  T
Q  120 gttgattggcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagagcagcaaaattgaacaactat 219  Q
    ||| | |||  || ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||  | || ||||| ||| |||||||||    
T  33286434 gttcagtggactggatatcctttcaaatatttgccatcaaattttcaccccaatgaacttgtagaattgatcttgcatagtagcaacattaaacaactat 33286335  T
Q  220 ggacaaacaagaaggtactataaattctcttattattaatgtttatcttagaaatataaacaaaattgaaacaattatctcatagtcaaagtaattggtg 319  Q
    ||| ||| |||||||||||||||||| ||||||||| |||||| |||||||||||||||||||| ||||||||||| ||| | | ||||| |||| | |     
T  33286334 ggagaaagaagaaggtactataaattatcttattataaatgttcatcttagaaatataaacaaatttgaaacaattctcttaaaatcaaattaatggctc 33286235  T
Q  320 tatttttgtttgtttt 335  Q
     |||||||||||||||    
T  33286234 catttttgtttgtttt 33286219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 28 - 352
Target Start/End: Complemental strand, 33263618 - 33263291
Alignment:
Q  28 tgtcaaaaatgaataatcttagattcctcatcttcaagtacggtgggtgcatctcaggaagtccatggagtttttcaaacaaattaaaatatgttgattg 127  Q
    |||||||||||| |||||||||||| |||||| ||| ||||||   ||  ||||||||||| ||| |  || ||||||||||||| | ||||||||| ||    
T  33263618 tgtcaaaaatgagtaatcttagattgctcatcatcaggtacggaatgtatatctcaggaagcccaagttgtctttcaaacaaattgagatatgttgagtg 33263519  T
Q  128 gcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagagcagcaaaattgaacaactatggacaaac 227  Q
    | ||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||   ||  ||||| |||  ||||||||||| ||||    
T  33263518 ggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattgatcttggtgaaaagcaacattacacaactatggaaaaac 33263419  T
Q  228 aagaaggtactataaattctcttattattaatgt---ttatcttagaaatataaacaaaattgaaacaattatctcatagtcaaagtaattggtgtattt 324  Q
    |||||||||||||||||||||||||||||||| |   | ||||||||||||||| |||| | ||||||||| ||| ||| |||||||||| | | |||||    
T  33263418 aagaaggtactataaattctcttattattaatattcatcatcttagaaatataaccaaattcgaaacaattctcttataatcaaagtaatggctctattt 33263319  T
Q  325 ttgtttgttttacatgtcccagtatctg 352  Q
    || ||  || | |||||| |||||||||    
T  33263318 ttattgtttattcatgtcacagtatctg 33263291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 100 - 351
Target Start/End: Original strand, 31561987 - 31562238
Alignment:
Q  100 tttcaaacaaattaaaatatgttgattggcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagag 199  Q
    |||| |||||||||| ||||||||| |||| |||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||   |||    
T  31561987 tttcgaacaaattaagatatgttgagtggcttgaatatcctttcaagtatttgccatcaagttttcacccctatgaacttgtagaattgatcttggcgag 31562086  T
Q  200 cagcaaaattgaacaactatggacaaacaagaaggtactataaattctcttattattaatgtttatcttagaaatataaacaaaattgaaacaattatct 299  Q
     ||||  |||   |||||||||||||||||||||||||| |||||| ||||||||||| |  ||||||||||| |||||||||| | |||||||||||||    
T  31562087 aagcagcattacgcaactatggacaaacaagaaggtactgtaaattatcttattattactaattatcttagaactataaacaaattagaaacaattatct 31562186  T
Q  300 catagtcaaagtaattggtgtatttttgtttgttttacatgtcccagtatct 351  Q
      || |||||||||| | | ||||||||||||||||  ||||| ||||||||    
T  31562187 tttaatcaaagtaatggctctatttttgtttgttttttatgtcacagtatct 31562238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 100 - 256
Target Start/End: Complemental strand, 33401529 - 33401373
Alignment:
Q  100 tttcaaacaaattaaaatatgttgattggcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagag 199  Q
    |||||||| |||||| ||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||   | |    
T  33401529 tttcaaacgaattaagatatgttgattggcatgaatatcctttcaagtatttgccaacaagttttcaccccaatgaacttgtagaattgatcttgtggtg 33401430  T
Q  200 cagcaaaattgaacaactatggacaaacaagaaggtactataaattctcttattatt 256  Q
     ||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  33401429 tagcaacattaaacaactatggaaaaacaagaaggtactataaattctcttattatt 33401373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 14 - 342
Target Start/End: Complemental strand, 9167755 - 9167433
Alignment:
Q  14 gaacgctgaacacgtgtcaaaaatgaataatcttagattcctcatcttcaagtacggtgggtgcatctcaggaagtccatggagtttttcaaacaaatta 113  Q
    ||||| ||||||| |||||||||||| || ||||||||| |||||| |||| |||||| ||   |||| |      ||||| ||| |||| ||| |||||    
T  9167755 gaacgttgaacacttgtcaaaaatgagtagtcttagattgctcatcatcaaatacggttggaatatctta------ccatgtagtctttcgaacgaatta 9167662  T
Q  114 aaatatgttgattggcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagagcagcaaaattgaac 213  Q
    | |||| |||| ||| ||  ||||||||| |||||||||||||| | ||||||| |||||||||||||| || ||||||| ||  | ||||| ||| |||    
T  9167661 agatatcttgagtggtatcgatatcctttcaagtatttgccatcgagttttcacgccaatgaacttgtacaactgatcttgaactggagcaacattaaac 9167562  T
Q  214 aactatggacaaacaagaaggtactataaattctcttattattaatgtttatcttagaaatataaacaaaattgaaacaattatctcatagtcaaagtaa 313  Q
    ||||||||| |||||| ||||||||||||| |||||||||||||  |||||| ||||||||||||||||| | ||||||||| ||| | | |||||||||    
T  9167561 aactatggaaaaacaaaaaggtactataaactctcttattattaccgtttattttagaaatataaacaaattcgaaacaattttcttacaatcaaagtaa 9167462  T
Q  314 ttggtgtatttttgtttgttttacatgtc 342  Q
    | | | |||||||||| ||||| ||||||    
T  9167461 tggctctatttttgttggtttttcatgtc 9167433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 134 - 314
Target Start/End: Complemental strand, 33058438 - 33058255
Alignment:
Q  134 atatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagagcagcaaaattgaacaactatggacaaacaagaag 233  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| | |   ||||| ||| |||||||||||| ||||||||||    
T  33058438 atatccttccaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttgacggagagcaacattaaacaactatggaaaaacaagaag 33058339  T
Q  234 gtactataaattctcttattattaatgttt---atcttagaaatataaacaaaattgaaacaattatctcatagtcaaagtaat 314  Q
    |||||||||||||| ||||||||||| |||   |||||||||||||||||||| |  |||||||| ||| | | ||||||||||    
T  33058338 gtactataaattctattattattaatatttatcatcttagaaatataaacaaattcaaaacaattctcttacaatcaaagtaat 33058255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 342
Target Start/End: Complemental strand, 33272788 - 33272468
Alignment:
Q  20 tgaacacgtgtcaaaaatgaataatcttagattcctcatcttcaagtacggtgggtgcatctcaggaagtccatggagtttttcaaacaaattaaaatat 119  Q
    ||||||| || ||||||||| |||||||||||| |||||  |||||| |||| ||   ||| |||| |||| || |||  |||||||   ||||| ||||    
T  33272788 tgaacacttggcaaaaatgagtaatcttagattgctcataatcaagtgcggtcggaatatcccaggtagtctatcgagcctttcaaatgcattaagatat 33272689  T
Q  120 gttgattggcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagagcagcaaaattgaacaactat 219  Q
    ||||| ||| ||| ||||||||| |||| | | ||| ||| ||||||||||||||| ||| ||||||||||||| | ||  ||| | ||  |||||||||    
T  33272688 gttgagtgggatggatatcctttcaagtgtctaccaacaagttttcaccccaatgaccttatagaattgatcttgatgaatagcgacatcaaacaactat 33272589  T
Q  220 ggacaaacaagaaggtac-tataaattctcttattattaatgtttatcttagaaatataaacaaaattgaaacaattatctcatagtcaaagtaattggt 318  Q
    ||| |||||||||||||| ||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||| ||| | | |||| ||||| | |    
T  33272588 ggaaaaacaagaaggtacctataaattct---attattaatgtttatcttagaaatataaacaaatttgaaacaattctcttagaatcaatgtaatggtt 33272492  T
Q  319 gtatttttgtttgttttacatgtc 342  Q
     ||||||||||  |||| ||||||    
T  33272491 ctatttttgttattttttcatgtc 33272468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 145 - 280
Target Start/End: Complemental strand, 33359579 - 33359444
Alignment:
Q  145 agtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagagcagcaaaattgaacaactatggacaaacaagaaggtactataaat 244  Q
    ||||||||||| ||| |||| || ||||||||||||||||||||||||| ||||  ||||  ||| |||||||||||| ||||||||||||| |||||||    
T  33359579 agtatttgccaacaagttttaactccaatgaacttgtagaattgatcttgaagaaaagcagcattaaacaactatggaaaaacaagaaggtaatataaat 33359480  T
Q  245 tctcttattattaatgtttatcttagaaatataaac 280  Q
    ||||||||||||||||||||| ||||||||||||||    
T  33359479 tctcttattattaatgtttattttagaaatataaac 33359444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 28 - 283
Target Start/End: Complemental strand, 33389022 - 33388770
Alignment:
Q  28 tgtcaaaaatgaataatcttagattcctcatcttcaagtacggtgggtgcatctcaggaagtccatggagtttttcaaacaaattaaaatatgttgattg 127  Q
    |||||||||||| |||||||||||| |||||| ||||||  |||  |   ||| || | || |||| |||| ||||||||| ||||| ||||||||| ||    
T  33389022 tgtcaaaaatgagtaatcttagattactcatcatcaagtggggtccgaatatcccaagtagcccatcgagtctttcaaacacattaagatatgttgagtg 33388923  T
Q  128 gcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagagcagcaaaattgaacaactatggacaaac 227  Q
    | || | |||||||| |||||||||||||||| ||||||||||| ||| |||||||| |||||||| | |   ||| | ||  ||||||||||||  |||    
T  33388922 gaattattatcctttcaagtatttgccatcaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaac 33388823  T
Q  228 aagaaggtactataaattctcttattattaatgtttatcttagaaatataaacaaa 283  Q
    ||||||||| |||| |||   | |||||||||||||||||||||||||||||||||    
T  33388822 aagaaggtattatacatt---tgattattaatgtttatcttagaaatataaacaaa 33388770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 28 - 269
Target Start/End: Original strand, 33643711 - 33643956
Alignment:
Q  28 tgtcaaaaatgaataatcttagattcctcatcttcaagtacggtgggtgcatctcaggaagtccatggagtttttcaaacaaattaaaatatgttgattg 127  Q
    |||||||||||| |||||||||||| || ||| | |||| |||| ||   |||| || ||| ||| |  || |||||||  |||||| ||||||||| ||    
T  33643711 tgtcaaaaatgagtaatcttagattgctgatcataaagtgcggttggcatatcttagaaagcccaagttgtctttcaaaggaattaagatatgttgactg 33643810  T
Q  128 gcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagagcagcaaaattgaacaactatggacaaac 227  Q
    ||||   |||||||| | || |||||||||||||||||| |||||| |||||||||||||| |||| ||||  ||||| |||  ||||||||||| ||||    
T  33643811 gcatatgtatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttgaagaagagcaacattagacaactatggaaaaac 33643910  T
Q  228 aagaaggtactataaattctct----tattattaatgtttatctta 269  Q
    ||||||||| ||||||||||||    ||||||||||||||||||||    
T  33643911 aagaaggtaatataaattctcttatatattattaatgtttatctta 33643956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 33410798 - 33410701
Alignment:
Q  150 ttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagagcagcaaaattgaacaactatggacaaacaagaaggtactataaattct 247  Q
    ||||||| || ||||||||| ||||||||||| ||||||||||| ||||  ||||   |  |||||||||||| || |||||||||||||||||||||    
T  33410798 ttgccattaagttttcaccctaatgaacttgttgaattgatcttgaagaatagcagcttcaaacaactatggaaaagcaagaaggtactataaattct 33410701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 100 - 314
Target Start/End: Original strand, 17440001 - 17440216
Alignment:
Q  100 tttcaaacaaattaaaatatgttgattggcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagag 199  Q
    |||| |||||||||| ||||||||| |||| | |||||||||| |||||||||||| ||| |||||||||||||||||| ||||||||||| ||  |  |    
T  17440001 tttcgaacaaattaagatatgttgagtggcctaaatatcctttcaagtatttgccaacaagttttcaccccaatgaactagtagaattgattttggatgg 17440100  T
Q  200 cagcaaaattgaacaactatggacaaacaagaaggtactataaattctcttatt-attaatgtttatcttagaaatataaacaaaattgaaacaattatc 298  Q
     ||||| ||| || | ||||||| |||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||| | ||||||||| ||    
T  17440101 gagcaacattaaaaacctatggaaaaacaagaaggtaccataaattctcttattaattaatgtttatctttgaaatataaacaaattcgaaacaattttc 17440200  T
Q  299 tcatagtcaaagtaat 314  Q
    | ||| |||| |||||    
T  17440201 ttataatcaatgtaat 17440216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 102 - 252
Target Start/End: Complemental strand, 1535 - 1385
Alignment:
Q  102 tcaaacaaattaaaatatgttgattggcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagagca 201  Q
    ||||||||||||  ||||||| | |||  || ||||||||| |||||| ||||||||| |||||||||   |||||||||||||||||| ||   ||| |    
T  1535 tcaaacaaattacgatatgttcaatggactggatatcctttcaagtatctgccatcaagttttcaccctgctgaacttgtagaattgattttggtgagaa 1436  T
Q  202 gcaaaattgaacaactatggacaaacaagaaggtactataaattctcttat 252  Q
    ||   ||| |||||||||||| |||||||||||||||||||||||||||||    
T  1435 gctgcattaaacaactatggaaaaacaagaaggtactataaattctcttat 1385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 102 - 252
Target Start/End: Complemental strand, 7281 - 7131
Alignment:
Q  102 tcaaacaaattaaaatatgttgattggcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagagca 201  Q
    ||||||||||||  ||||||| | |||  || ||||||||| |||||| ||||||||| |||||||||   |||||||||||||||||| ||   ||| |    
T  7281 tcaaacaaattacgatatgttcaatggactggatatcctttcaagtatctgccatcaagttttcaccctgctgaacttgtagaattgattttggtgagaa 7182  T
Q  202 gcaaaattgaacaactatggacaaacaagaaggtactataaattctcttat 252  Q
    ||   ||| |||||||||||| |||||||||||||||||||||||||||||    
T  7181 gctgcattaaacaactatggaaaaacaagaaggtactataaattctcttat 7131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 100 - 255
Target Start/End: Original strand, 31503304 - 31503459
Alignment:
Q  100 tttcaaacaaattaaaatatgttgattggcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagag 199  Q
    |||| ||| |||||| ||||||||| |||  |||||||||||| ||||||||||| |||| |||||| || ||| ||||||| || |||||||| |||||    
T  31503304 tttctaacgaattaagatatgttgaatggagtgaatatcctttcaagtatttgccgtcaagttttcagccaaatcaacttgttgagttgatcttgaagag 31503403  T
Q  200 cagcaaaattgaacaactatggacaaacaagaaggtactataaattctcttattat 255  Q
     ||||  || |||||| |||||  | ||||||||||||| ||||| |||| |||||    
T  31503404 tagcagcatcgaacaattatgggaagacaagaaggtactctaaatcctctaattat 31503459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 31498070 - 31498136
Alignment:
Q  100 tttcaaacaaattaaaatatgttgattggcatgaatatccttttaagtatttgccatcaaattttca 166  Q
    |||| |||||||||| |||| |||| ||||||||||||||||| | |||||| ||||||||||||||    
T  31498070 tttccaacaaattaagatattttgagtggcatgaatatcctttcatgtatttaccatcaaattttca 31498136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 134 - 250
Target Start/End: Complemental strand, 31158108 - 31157992
Alignment:
Q  134 atatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagagcagcaaaattgaacaactatggacaaacaagaag 233  Q
    ||||||||| |||||||||||| ||  |||||| |||||| ||||||| ||||||||| | | |   ||||   |  |||||||||||| | ||||||||    
T  31158108 atatcctttcaagtatttgccagcatgttttcagcccaatcaacttgttgaattgatcatgaggcatagcagcgtcaaacaactatggaaagacaagaag 31158009  T
Q  234 gtactataaattctctt 250  Q
    |||||||||||||||||    
T  31158008 gtactataaattctctt 31157992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 31478170 - 31478247
Alignment:
Q  116 atatgttgattggcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatctt 193  Q
    ||||||||| |||  |||||||||||| |||||||||||||| | |||| || | ||| ||||||| |||||||||||    
T  31478170 atatgttgagtggagtgaatatcctttcaagtatttgccatcgagttttgactctaatcaacttgttgaattgatctt 31478247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 31484023 - 31484080
Alignment:
Q  134 atatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatc 191  Q
    ||||||||| | ||||||||||||||||||||  |||||| ||||||| |||||||||    
T  31484023 atatcctttcatgtatttgccatcaaattttcggcccaatcaacttgttgaattgatc 31484080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 31527318 - 31527234
Alignment:
Q  109 aattaaaatatgttgattggcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatctt 193  Q
    |||||| ||||||||| ||||  ||||||||||| | |||||||||||||| |||||| ||| |  ||||||| || ||||||||    
T  31527318 aattaagatatgttgagtggcgggaatatcctttcatgtatttgccatcaagttttcaaccctaccaacttgttgagttgatctt 31527234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 31149234 - 31149175
Alignment:
Q  134 atatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatctt 193  Q
    ||||||||| |||||||||||||||| |||||  || ||| ||||||| |||||||||||    
T  31149234 atatcctttcaagtatttgccatcaagttttctgcctaatcaacttgtcgaattgatctt 31149175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 250
Target Start/End: Original strand, 31491076 - 31491114
Alignment:
Q  212 acaactatggacaaacaagaaggtactataaattctctt 250  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  31491076 acaactatggaaagacaagaaggtactataaattctctt 31491114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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