View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15694_low_16 (Length: 365)
Name: NF15694_low_16
Description: NF15694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15694_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 6578427 - 6578090
Alignment:
| Q |
19 |
catcgtttgaaggatattcctgttgcccaggtaaggttccagtgacaagttgattagggactgatttttgtctttagacatttttgttcaatcaaccaaa |
118 |
Q |
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| T |
6578427 |
catcgtctgaaggacattcctgttgcccaggtaaggttccagtgacaagttgattagggactgatttttgtctttagacatttttgttcaatcaactaaa |
6578328 |
T |
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| Q |
119 |
acaattcatgcactgccagccattccatctggagcttaattttttcaataaagagaacagagttcttcattatcccgtcagggctttttatgtggatgga |
218 |
Q |
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| T |
6578327 |
acaattcatgcactgccagccattccatctggagcttaattttttcaataaagagaacagagttcttcattatcccgtcagggctttttatgtggatgga |
6578228 |
T |
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| Q |
219 |
ccagatcttatggcttataatctctcatctggattggagaatacctacagaaagctctataattcggtaacgtagagagagtagtaattttaacaaatat |
318 |
Q |
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| T |
6578227 |
ccagatcttatggcttataatctctcatctggattggagaatacctacagaaagctctataattcggtaacgtagagagagtagtaattttaacaaatat |
6578128 |
T |
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| Q |
319 |
tgtgttgtccctctaattctattgaaatcatcctttgc |
356 |
Q |
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| T |
6578127 |
tgtgttgtccctctaattctattgaaatcatcctttgc |
6578090 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 34243156 - 34243242
Alignment:
| Q |
132 |
tgccagccattccatctggagcttaattttttcaataaagagaacagagttcttcattatcccgtcagggctttttatgtggatgga |
218 |
Q |
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| T |
34243156 |
tgccagccatatcatttggagctaaatttttttaataaagcaaaccgagttcttcattatccatccagggcgttctatatggatgga |
34243242 |
T |
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