View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15694_low_19 (Length: 301)

Name: NF15694_low_19

Description: NF15694

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF15694_low_19

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 131; Significance: 6e-68; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 131; E-Value: 6e-68

Query Start/End: Original strand, 131 - 283

Target Start/End: Complemental strand, 47566403 - 47566254

Alignment:

Q	131	tcttggaattctaagatgtaataatatttaaggagtaataaggagtatggtggtcattggtgtgcttactggttacaagctgatcgagtttacgttaaaa	230	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	47566403	tcttggaattctaagatgtaata---tttaaggagtaataaggagtatggtggtcattggtgtgcttcctagttacaagctgatcgagtttacgttaaaa	47566307	T

Q	231	taggtggtttgatatttaactttacactctagagcataaaagagtagtgattt	283	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	47566306	taggtggtttgatatttaactttacactctagagcataaaagagtagtgattt	47566254	T

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Target: chr3; HSP #2

Raw Score: 57; E-Value: 8e-24

Query Start/End: Original strand, 4 - 68

Target Start/End: Complemental strand, 47566467 - 47566403

Alignment:

Q	4	agagaattttaggatcacatcaattaggttaaagctatcaaactttctgattaggcatgcggttt	68	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	47566467	agagaattttaggatcacatcaattaggctaaggctatcaaactttctgattaggcatgcggttt	47566403	T

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