View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15694_low_23 (Length: 276)

Name: NF15694_low_23
Description: NF15694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15694_low_23
NF15694_low_23
[»] scaffold0288 (1 HSPs)
scaffold0288 (92-265)||(17867-18042)
[»] chr8 (11 HSPs)
chr8 (93-156)||(30208316-30208379)
chr8 (95-156)||(1162045-1162106)
chr8 (92-156)||(35179276-35179338)
chr8 (95-155)||(31333091-31333151)
chr8 (92-155)||(5594899-5594962)
chr8 (92-156)||(40719821-40719887)
chr8 (92-159)||(34514561-34514628)
chr8 (95-156)||(36132793-36132854)
chr8 (92-156)||(34173539-34173603)
chr8 (107-157)||(39401954-39402004)
chr8 (104-156)||(42921493-42921545)
[»] chr4 (9 HSPs)
chr4 (92-159)||(46550629-46550696)
chr4 (98-156)||(47541737-47541795)
chr4 (92-157)||(15827051-15827116)
chr4 (101-156)||(41464731-41464786)
chr4 (105-156)||(47732457-47732508)
chr4 (102-156)||(36364605-36364659)
chr4 (95-157)||(39503431-39503493)
chr4 (95-156)||(17056733-17056793)
chr4 (92-157)||(41844168-41844233)
[»] chr1 (13 HSPs)
chr1 (92-159)||(24241594-24241661)
chr1 (92-158)||(41942896-41942962)
chr1 (98-157)||(16253152-16253211)
chr1 (93-156)||(34773347-34773410)
chr1 (92-157)||(8971545-8971610)
chr1 (98-155)||(15390402-15390459)
chr1 (92-156)||(48506795-48506859)
chr1 (95-157)||(7101275-7101337)
chr1 (108-157)||(21356922-21356971)
chr1 (98-152)||(26764620-26764674)
chr1 (98-156)||(47370041-47370099)
chr1 (98-143)||(8971436-8971481)
chr1 (122-158)||(45382797-45382833)
[»] chr2 (10 HSPs)
chr2 (92-157)||(36400972-36401037)
chr2 (95-156)||(37721568-37721629)
chr2 (92-156)||(3870146-3870208)
chr2 (100-156)||(34480055-34480111)
chr2 (102-160)||(30706074-30706132)
chr2 (98-143)||(29685524-29685569)
chr2 (98-157)||(9009105-9009164)
chr2 (96-153)||(3949249-3949306)
chr2 (92-153)||(28733717-28733778)
chr2 (92-156)||(38879633-38879697)
[»] chr3 (10 HSPs)
chr3 (106-158)||(25199073-25199125)
chr3 (98-156)||(2008522-2008580)
chr3 (92-155)||(22831103-22831166)
chr3 (98-156)||(45805455-45805513)
chr3 (101-156)||(22220334-22220389)
chr3 (99-156)||(1994781-1994838)
chr3 (92-157)||(26466256-26466321)
chr3 (92-142)||(26466181-26466231)
chr3 (104-158)||(39170903-39170957)
chr3 (108-156)||(34060954-34061002)
[»] chr7 (8 HSPs)
chr7 (95-157)||(34998648-34998710)
chr7 (95-156)||(30783412-30783473)
chr7 (95-156)||(45627340-45627401)
chr7 (95-157)||(32677063-32677125)
chr7 (95-158)||(46023248-46023311)
chr7 (98-129)||(40076647-40076678)
chr7 (98-153)||(46910236-46910291)
chr7 (92-156)||(8541547-8541609)
[»] chr5 (11 HSPs)
chr5 (95-158)||(20524529-20524592)
chr5 (98-157)||(37872128-37872187)
chr5 (95-158)||(10719866-10719929)
chr5 (98-156)||(16778259-16778317)
chr5 (98-156)||(23145929-23145987)
chr5 (98-156)||(20654461-20654519)
chr5 (93-153)||(22472083-22472143)
chr5 (96-156)||(42285289-42285349)
chr5 (113-155)||(21239003-21239045)
chr5 (98-143)||(16778144-16778189)
chr5 (105-133)||(34849571-34849599)
[»] chr6 (4 HSPs)
chr6 (92-158)||(994864-994930)
chr6 (92-156)||(26606207-26606271)
chr6 (92-157)||(7080270-7080335)
chr6 (106-153)||(2141175-2141222)
[»] scaffold0009 (1 HSPs)
scaffold0009 (104-156)||(25965-26017)
[»] scaffold0095 (1 HSPs)
scaffold0095 (107-157)||(35498-35548)
[»] scaffold0289 (1 HSPs)
scaffold0289 (98-155)||(12386-12443)


Alignment Details
Target: scaffold0288 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 92 - 265
Target Start/End: Complemental strand, 18042 - 17867
Alignment:
Q  92 tacttctttatgtgtgtgtgaccaaacacttttt-ctttggtcccgtgaccatattagaatttctcttacctctattacagtaacacgggttagaagaaa 190  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18042 tacttctttatgtgtgtgtgaccaaacacttttttctttggtcccgtgaccatattagaatttctcttacctctattacagtaacacgggttagaagaaa 17943  T
Q  191 gaaggg-nnnnnnnngacagtatcaaataaggtgtgactggatggtggttgttgggatgagttttggtttgatatt 265  Q
    ||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17942 gaagggaaaaaaaaagacagtatcaaataaggtgtgactggatggtggttgttgggatgagttttggtttgatatt 17867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 93 - 156
Target Start/End: Original strand, 30208316 - 30208379
Alignment:
Q  93 acttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctc 156  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30208316 acttctttatgtgtgtgtgaccaaacactttttctttggtcctgtgaccatattagaatttctc 30208379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 1162106 - 1162045
Alignment:
Q  95 ttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctc 156  Q
    ||||||||||||||||||||||||||||||||||| ||||  ||||||||| ||||||||||    
T  1162106 ttctttatgtgtgtgtgaccaaacactttttctttagtcctatgaccatataagaatttctc 1162045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 35179276 - 35179338
Alignment:
Q  92 tacttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctc 156  Q
    |||||||||||| |||||||||||||||||||||||||| |||  ||||||||||||||||||||    
T  35179276 tacttctttatgcgtgtgtgaccaaacactttttctttgatcc--tgaccatattagaatttctc 35179338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 31333151 - 31333091
Alignment:
Q  95 ttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttct 155  Q
    ||||||||||||||||||||||||||| |||||||| ||  ||||||||||||||||||||    
T  31333151 ttctttatgtgtgtgtgaccaaacactatttctttgatcatgtgaccatattagaatttct 31333091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 155
Target Start/End: Original strand, 5594899 - 5594962
Alignment:
Q  92 tacttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttct 155  Q
    ||||||||||| |||||||||| |||||||||||||||| ||| |||||||||||| |||||||    
T  5594899 tacttctttatatgtgtgtgactaaacactttttctttgatcctgtgaccatattaaaatttct 5594962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 40719887 - 40719821
Alignment:
Q  92 tacttctttatgtgtgt--gtgaccaaacactttttctttggtcccgtgaccatattagaatttctc 156  Q
    |||||||||||||||||  |||||||||||||||||||||||||  | |||||||||||||||||||    
T  40719887 tacttctttatgtgtgtatgtgaccaaacactttttctttggtcatgcgaccatattagaatttctc 40719821  T

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Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 34514561 - 34514628
Alignment:
Q  92 tacttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctctta 159  Q
    ||||| |||||||||||||||||||||||| ||| |||||||  ||||| |||||| |||||||||||    
T  34514561 tacttttttatgtgtgtgtgaccaaacactatttgtttggtcttgtgactatattaaaatttctctta 34514628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 36132793 - 36132854
Alignment:
Q  95 ttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctc 156  Q
    |||||||||||||| | |||||||||||||| ||||| |   ||||||||||||||||||||    
T  36132793 ttctttatgtgtgtataaccaaacactttttatttggccatatgaccatattagaatttctc 36132854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 34173539 - 34173603
Alignment:
Q  92 tacttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctc 156  Q
    ||||| ||||| |||||||||||||||||||||| ||| |||  |||||||| ||| ||||||||    
T  34173539 tacttgtttatatgtgtgtgaccaaacactttttgtttagtcttgtgaccatgttaaaatttctc 34173603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 157
Target Start/End: Complemental strand, 39402004 - 39401954
Alignment:
Q  107 gtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctct 157  Q
    |||||||||||||||||||||||| ||  ||||| |||||| |||||||||    
T  39402004 gtgtgaccaaacactttttctttgatcatgtgacgatattaaaatttctct 39401954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 42921493 - 42921545
Alignment:
Q  104 tgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctc 156  Q
    ||||||||| ||||||||||||||||| ||| ||||| || ||| ||||||||    
T  42921493 tgtgtgtgatcaaacactttttctttgatcctgtgactatgttataatttctc 42921545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 46550696 - 46550629
Alignment:
Q  92 tacttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctctta 159  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  46550696 tacttctttatgtgtgtgtgaccaaacactttttctttggtcttgtgaccatattagaatttctctta 46550629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 47541795 - 47541737
Alignment:
Q  98 tttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctc 156  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  47541795 tttatgtgtgtgtgaccaaacactttttctttgatctcgtgaccatattagaatttctc 47541737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 15827116 - 15827051
Alignment:
Q  92 tacttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctct 157  Q
    |||||||| |||||||| |||||||||||| ||||||| ||||||| |||||||||||||||||||    
T  15827116 tacttcttaatgtgtgtatgaccaaacactatttctttagtcccgtaaccatattagaatttctct 15827051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 156
Target Start/End: Complemental strand, 41464786 - 41464731
Alignment:
Q  101 atgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctc 156  Q
    ||||||||||||||||||||| ||||||| |||| || ||||||||| ||||||||    
T  41464786 atgtgtgtgtgaccaaacactatttctttagtcctgtaaccatattataatttctc 41464731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 156
Target Start/End: Original strand, 47732457 - 47732508
Alignment:
Q  105 gtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctc 156  Q
    |||||||| |||||| |||||||||| ||| |||||||||||||||||||||    
T  47732457 gtgtgtgatcaaacaatttttctttgatcctgtgaccatattagaatttctc 47732508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 36364659 - 36364605
Alignment:
Q  102 tgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctc 156  Q
    |||||||||||||||||| ||||| |||| || ||||||||||||| ||||||||    
T  36364659 tgtgtgtgtgaccaaacattttttatttgatcacgtgaccatattaaaatttctc 36364605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 39503493 - 39503431
Alignment:
Q  95 ttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctct 157  Q
    |||||||||||||||||| |||||||||||| |||  ||  |||||||||||| |||||||||    
T  39503493 ttctttatgtgtgtgtgatcaaacactttttatttaatcatgtgaccatattaaaatttctct 39503431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 17056733 - 17056793
Alignment:
Q  95 ttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctc 156  Q
    |||||||||||||| ||||||||||| |||| |||||||  |||||||| ||||||||||||    
T  17056733 ttctttatgtgtgtatgaccaaacac-ttttatttggtcgtgtgaccattttagaatttctc 17056793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 41844233 - 41844168
Alignment:
Q  92 tacttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctct 157  Q
    ||||| |||||||||||||||||||| ||||||| |  ||||  |||| ||| |||||||||||||    
T  41844233 tacttgtttatgtgtgtgtgaccaaatactttttgtcgggtcttgtgaacatgttagaatttctct 41844168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 24241594 - 24241661
Alignment:
Q  92 tacttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctctta 159  Q
    ||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  24241594 tacttttttatgtgtgtgtgaccaaatactttttctttggtcctgtgaccatattagaatttctctta 24241661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 92 - 158
Target Start/End: Original strand, 41942896 - 41942962
Alignment:
Q  92 tacttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctctt 158  Q
    ||||||||||||||||| |||||||||||||| |||||||||  |||||||||||||||||||||||    
T  41942896 tacttctttatgtgtgtatgaccaaacactttatctttggtcgtgtgaccatattagaatttctctt 41942962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 16253152 - 16253211
Alignment:
Q  98 tttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctct 157  Q
    ||||||||||||||||||||||||||||||||| ||  |||| |||||||||||||||||    
T  16253152 tttatgtgtgtgtgaccaaacactttttctttgatcatgtgatcatattagaatttctct 16253211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 34773410 - 34773347
Alignment:
Q  93 acttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctc 156  Q
    |||||||| ||| ||||||| ||||||||||||||||||||| || ||||||||||||||||||    
T  34773410 acttctttttgtatgtgtgatcaaacactttttctttggtcctgtaaccatattagaatttctc 34773347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 8971545 - 8971610
Alignment:
Q  92 tacttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctct 157  Q
    ||||| ||||||| ||| ||||| |||||||||| |||||||| ||||||||||||||||||||||    
T  8971545 tacttatttatgtatgtatgaccgaacactttttttttggtcctgtgaccatattagaatttctct 8971610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 15390459 - 15390402
Alignment:
Q  98 tttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttct 155  Q
    ||||||||| |||||||||||||| ||| ||||||||||||||||||||||| |||||    
T  15390459 tttatgtgtatgtgaccaaacactatttgtttggtcccgtgaccatattagactttct 15390402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 48506795 - 48506859
Alignment:
Q  92 tacttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctc 156  Q
    ||||||||||| ||||||||| |||||||| ||||||| |||  |||||||||||||||||||||    
T  48506795 tacttctttatatgtgtgtgatcaaacactatttctttagtcaggtgaccatattagaatttctc 48506859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 7101337 - 7101275
Alignment:
Q  95 ttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctct 157  Q
    |||||||| |||||||||||||||||||||| |||| || ||| ||||| |||||||||||||    
T  7101337 ttctttatatgtgtgtgaccaaacactttttatttgatcacgtaaccatgttagaatttctct 7101275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 21356922 - 21356971
Alignment:
Q  108 tgtgaccaaacactttttctttggtcccgtgaccatattagaatttctct 157  Q
    |||||||||||||| ||||||||||| |||| ||||||||||||||||||    
T  21356922 tgtgaccaaacactatttctttggtctcgtggccatattagaatttctct 21356971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 26764620 - 26764674
Alignment:
Q  98 tttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatt 152  Q
    |||||||||||||||||||||||| ||| ||||| |  |||||||||||||||||    
T  26764620 tttatgtgtgtgtgaccaaacactatttgtttggccttgtgaccatattagaatt 26764674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 47370099 - 47370041
Alignment:
Q  98 tttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctc 156  Q
    |||||||| ||||||||||||||||||| ||||| |  |||||||| ||||| ||||||    
T  47370099 tttatgtgcgtgtgaccaaacactttttgtttgggcttgtgaccatgttagagtttctc 47370041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 8971481 - 8971436
Alignment:
Q  98 tttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccat 143  Q
    ||||| |||||||||||||| |||||||||||||||  ||||||||    
T  8971481 tttatatgtgtgtgaccaaatactttttctttggtcgtgtgaccat 8971436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 45382797 - 45382833
Alignment:
Q  122 ttttctttggtcccgtgaccatattagaatttctctt 158  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  45382797 ttttctttgatcctgtgaccatattagaatttctctt 45382833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 36400972 - 36401037
Alignment:
Q  92 tacttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctct 157  Q
    |||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||    
T  36400972 tacttctttatgtgtgtgtgtccaaacactttttctttagtcctgtgaccatattagaatttctct 36401037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 37721568 - 37721629
Alignment:
Q  95 ttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctc 156  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  37721568 ttctttatgtgtgtgtgaccaaacactttttctttagtctcgtgaccatattagaatttctc 37721629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 3870146 - 3870208
Alignment:
Q  92 tacttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctc 156  Q
    ||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3870146 tacttctttatgtg--tgtgaccaaacactttttctttggtcctgtgaccatattagaatttctc 3870208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 34480111 - 34480055
Alignment:
Q  100 tatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctc 156  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34480111 tatgtgtttgtgaccaaacactttttctttggtcctgtgaccatattagaatttctc 34480055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 30706132 - 30706074
Alignment:
Q  102 tgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctcttac 160  Q
    |||||||||||||||||||||||| |||| ||  |||||||||||| ||||||||||||    
T  30706132 tgtgtgtgtgaccaaacactttttatttgatcatgtgaccatattaaaatttctcttac 30706074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 29685524 - 29685569
Alignment:
Q  98 tttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccat 143  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||    
T  29685524 tttatgtgtgtgtgaccaaacactttttctttggtcatgtgaccat 29685569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 9009105 - 9009164
Alignment:
Q  98 tttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctct 157  Q
    ||||||| | |||||||||||||| ||| |||||||  ||||||||||||||||||||||    
T  9009105 tttatgtctatgtgaccaaacactatttgtttggtcttgtgaccatattagaatttctct 9009164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 153
Target Start/End: Complemental strand, 3949306 - 3949249
Alignment:
Q  96 tctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaattt 153  Q
    ||||||||| |||||||||||||| |||||||||  |||| ||||||||||| |||||    
T  3949306 tctttatgtatgtgtgaccaaacattttttctttaatcccatgaccatattataattt 3949249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 153
Target Start/End: Complemental strand, 28733778 - 28733717
Alignment:
Q  92 tacttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaattt 153  Q
    ||||| || |||| ||| |||||||||||| |||||||| ||  ||||||||||||||||||    
T  28733778 tacttattcatgtatgtttgaccaaacactatttctttgatcatgtgaccatattagaattt 28733717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 38879633 - 38879697
Alignment:
Q  92 tacttctttatgtgtgtgtgaccaaacactttttctttggtc--ccgtgaccatattagaatttctc 156  Q
    ||||||||||||||| ||  |||||||| |||||||||||||    |||||||||||||||||||||    
T  38879633 tacttctttatgtgtatg--accaaacattttttctttggtcatatgtgaccatattagaatttctc 38879697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 25199073 - 25199125
Alignment:
Q  106 tgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctctt 158  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25199073 tgtgtgaccaaacactttttctttggtcctgtgaccatattagaatttctctt 25199125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 98 - 156
Target Start/End: Original strand, 2008522 - 2008580
Alignment:
Q  98 tttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctc 156  Q
    |||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||    
T  2008522 tttatgtgtgtgtggccaaacactatttctttggtcctgtgaccatattagaatttctc 2008580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 155
Target Start/End: Complemental strand, 22831166 - 22831103
Alignment:
Q  92 tacttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttct 155  Q
    ||||||||||| |||||||||| |||||||||||||||| ||| |||||||||||| |||||||    
T  22831166 tacttctttatatgtgtgtgactaaacactttttctttgatcctgtgaccatattaaaatttct 22831103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 45805513 - 45805455
Alignment:
Q  98 tttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctc 156  Q
    ||||||||| |||||||||||||||||| |||||||  |||||||||||||||||||||    
T  45805513 tttatgtgtatgtgaccaaacactttttatttggtcatgtgaccatattagaatttctc 45805455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 22220334 - 22220389
Alignment:
Q  101 atgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctc 156  Q
    ||||||||||| ||||| |||||||||||||||| |||||||||||| ||||||||    
T  22220334 atgtgtgtgtgtccaaatactttttctttggtcctgtgaccatattaaaatttctc 22220389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 156
Target Start/End: Complemental strand, 1994838 - 1994781
Alignment:
Q  99 ttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctc 156  Q
    |||||||| |||||||||| ||| |||||||||||  |||||||||||||||||||||    
T  1994838 ttatgtgtctgtgaccaaatactatttctttggtcatgtgaccatattagaatttctc 1994781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 26466321 - 26466256
Alignment:
Q  92 tacttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctct 157  Q
    ||||||||||||||||||||||||||   ||||| |||  ||| ||||||||||||||||||||||    
T  26466321 tacttctttatgtgtgtgtgaccaaatttttttttttttatcctgtgaccatattagaatttctct 26466256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 26466231 - 26466181
Alignment:
Q  92 tacttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgacca 142  Q
    ||||| |||||||||||||||||||||||||||| |||  ||| |||||||    
T  26466231 tacttttttatgtgtgtgtgaccaaacacttttttttttctcctgtgacca 26466181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 39170957 - 39170903
Alignment:
Q  104 tgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctctt 158  Q
    |||||||||||||||| | ||| |||| ||  |||||||||||||||||||||||    
T  39170957 tgtgtgtgaccaaacattatttatttgatcttgtgaccatattagaatttctctt 39170903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 34060954 - 34061002
Alignment:
Q  108 tgtgaccaaacactttttctttggtcccgtgaccatattagaatttctc 156  Q
    |||||||||||||| ||| |||||||  |||||||| ||||||||||||    
T  34060954 tgtgaccaaacactatttgtttggtcttgtgaccatgttagaatttctc 34061002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 34998648 - 34998710
Alignment:
Q  95 ttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctct 157  Q
    ||||||||||||||||||||||| |||||||||||| ||  ||||||||||||||||||||||    
T  34998648 ttctttatgtgtgtgtgaccaaatactttttctttgatcatgtgaccatattagaatttctct 34998710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 30783473 - 30783412
Alignment:
Q  95 ttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctc 156  Q
    ||||||||||||||||||||||||||||||| |||||||  |||||||| ||||||||||||    
T  30783473 ttctttatgtgtgtgtgaccaaacactttttatttggtcatgtgaccattttagaatttctc 30783412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 45627401 - 45627340
Alignment:
Q  95 ttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctc 156  Q
    ||||||||||||||||||||||||| ||||| |||||||  |||||||| ||||||||||||    
T  45627401 ttctttatgtgtgtgtgaccaaacagtttttatttggtcatgtgaccattttagaatttctc 45627340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 32677063 - 32677125
Alignment:
Q  95 ttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctct 157  Q
    |||||||| |||||||||||||||| ||||| |||| ||  ||||||||||||||||||||||    
T  32677063 ttctttatatgtgtgtgaccaaacattttttatttgatcatgtgaccatattagaatttctct 32677125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 158
Target Start/End: Original strand, 46023248 - 46023311
Alignment:
Q  95 ttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctctt 158  Q
    ||||||||| |||| |||||||||| ||||| |||||||   ||||||||||||||||||||||    
T  46023248 ttctttatgcgtgtatgaccaaacattttttatttggtcatctgaccatattagaatttctctt 46023311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 129
Target Start/End: Complemental strand, 40076678 - 40076647
Alignment:
Q  98 tttatgtgtgtgtgaccaaacactttttcttt 129  Q
    ||||||||||||||||||||||||||||||||    
T  40076678 tttatgtgtgtgtgaccaaacactttttcttt 40076647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 153
Target Start/End: Complemental strand, 46910291 - 46910236
Alignment:
Q  98 tttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaattt 153  Q
    ||||||||| ||||| |||||||||||||||| |||  |||| |||||||||||||    
T  46910291 tttatgtgtttgtgatcaaacactttttctttagtcttgtgatcatattagaattt 46910236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 8541547 - 8541609
Alignment:
Q  92 tacttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctc 156  Q
    ||||||||||||||  |||||||||||||| |||||||| |||  | ||||||||| ||||||||    
T  8541547 tacttctttatgtg--tgtgaccaaacactatttctttgatcctataaccatattaaaatttctc 8541609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 95 - 158
Target Start/End: Complemental strand, 20524592 - 20524529
Alignment:
Q  95 ttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctctt 158  Q
    ||||||||||||||||||||||||||||||| |||| ||  |||| ||||||||||||||||||    
T  20524592 ttctttatgtgtgtgtgaccaaacactttttatttgatcatgtgatcatattagaatttctctt 20524529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 157
Target Start/End: Complemental strand, 37872187 - 37872128
Alignment:
Q  98 tttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctct 157  Q
    |||||||||||||||||||| ||||||||||||||||  ||| |||||||||||||||||    
T  37872187 tttatgtgtgtgtgaccaaatactttttctttggtcctctgatcatattagaatttctct 37872128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 158
Target Start/End: Original strand, 10719866 - 10719929
Alignment:
Q  95 ttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctctt 158  Q
    |||||||||||| |||||||||||||||||| |||||||  ||||||||| || ||||||||||    
T  10719866 ttctttatgtgtttgtgaccaaacactttttatttggtcatgtgaccataataaaatttctctt 10719929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 156
Target Start/End: Original strand, 16778259 - 16778317
Alignment:
Q  98 tttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctc 156  Q
    ||||||||||| ||||||| |||||||| |||||||| ||| |||||||||||||||||    
T  16778259 tttatgtgtgtatgaccaagcactttttatttggtcctgtggccatattagaatttctc 16778317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 23145987 - 23145929
Alignment:
Q  98 tttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctc 156  Q
    ||||||||| |||||||||| |||||||||||| |||  ||||||||||||||||||||    
T  23145987 tttatgtgtatgtgaccaaatactttttctttgatcctatgaccatattagaatttctc 23145929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 20654519 - 20654461
Alignment:
Q  98 tttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctc 156  Q
    ||||||||||| |||  ||||||||||| |||||||  |||||||||||||||||||||    
T  20654519 tttatgtgtgtttgatgaaacactttttatttggtcatgtgaccatattagaatttctc 20654461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 153
Target Start/End: Complemental strand, 22472143 - 22472083
Alignment:
Q  93 acttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaattt 153  Q
    |||| ||||||||||||||| |||||||| ||| ||||||   ||||||||||||||||||    
T  22472143 acttgtttatgtgtgtgtgagcaaacactatttgtttggtgttgtgaccatattagaattt 22472083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 42285289 - 42285349
Alignment:
Q  96 tctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctc 156  Q
    |||||||  |||||||| ||||||||||||||||||| |  ||||| ||||||||||||||    
T  42285289 tctttatacgtgtgtgatcaaacactttttctttggttctatgaccctattagaatttctc 42285349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 21239045 - 21239003
Alignment:
Q  113 ccaaacactttttctttggtcccgtgaccatattagaatttct 155  Q
    ||||||||||||| |||||||  ||||||||||||||||||||    
T  21239045 ccaaacactttttgtttggtcttgtgaccatattagaatttct 21239003  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 16778189 - 16778144
Alignment:
Q  98 tttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccat 143  Q
    |||||||||||||||||||||||||||  |||| ||| ||||||||    
T  16778189 tttatgtgtgtgtgaccaaacacttttcatttgatcctgtgaccat 16778144  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 133
Target Start/End: Original strand, 34849571 - 34849599
Alignment:
Q  105 gtgtgtgaccaaacactttttctttggtc 133  Q
    |||||||||||||||||||||||||||||    
T  34849571 gtgtgtgaccaaacactttttctttggtc 34849599  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 158
Target Start/End: Original strand, 994864 - 994930
Alignment:
Q  92 tacttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctctt 158  Q
    ||||| |||||||||||||||||||||||| ||| |||||||  |||||||| ||||||||||||||    
T  994864 tacttgtttatgtgtgtgtgaccaaacactatttatttggtcttgtgaccatgttagaatttctctt 994930  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 26606207 - 26606271
Alignment:
Q  92 tacttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctc 156  Q
    ||||| |||||||||||||||||||||||||||| || |||   |||||||| ||||||||||||    
T  26606207 tacttgtttatgtgtgtgtgaccaaacactttttgttcggtattgtgaccatgttagaatttctc 26606271  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 7080270 - 7080335
Alignment:
Q  92 tacttctttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctct 157  Q
    ||||||||||| | |||||||||||| | ||| | |||||||  ||||||||||||||||||||||    
T  7080270 tacttctttatctatgtgtgaccaaatagtttctttttggtcatgtgaccatattagaatttctct 7080335  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 153
Target Start/End: Complemental strand, 2141222 - 2141175
Alignment:
Q  106 tgtgtgaccaaacactttttctttggtcccgtgaccatattagaattt 153  Q
    ||||||||||||||||||||||||| ||   |||||||||||||||||    
T  2141222 tgtgtgaccaaacactttttctttgatcatatgaccatattagaattt 2141175  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 25965 - 26017
Alignment:
Q  104 tgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctc 156  Q
    |||||||| |||||||||||| || |||||  |||||||||||||||||||||    
T  25965 tgtgtgtgcccaaacacttttcctatggtcatgtgaccatattagaatttctc 26017  T

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Target: scaffold0095 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 157
Target Start/End: Original strand, 35498 - 35548
Alignment:
Q  107 gtgtgaccaaacactttttctttggtcccgtgaccatattagaatttctct 157  Q
    |||||||||||||||||||||||| ||  ||||| |||||| |||||||||    
T  35498 gtgtgaccaaacactttttctttgatcatgtgacgatattaaaatttctct 35548  T

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Target: scaffold0289 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 12386 - 12443
Alignment:
Q  98 tttatgtgtgtgtgaccaaacactttttctttggtcccgtgaccatattagaatttct 155  Q
    |||||||||  ||||||||| ||||||| |||||||  |||||||| |||||||||||    
T  12386 tttatgtgttggtgaccaaatactttttgtttggtcttgtgaccatgttagaatttct 12443  T

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