View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15694_low_24 (Length: 266)

Name: NF15694_low_24
Description: NF15694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15694_low_24
NF15694_low_24
[»] chr7 (1 HSPs)
chr7 (60-256)||(11470787-11470983)
[»] chr8 (4 HSPs)
chr8 (218-253)||(10440374-10440409)
chr8 (224-253)||(12170600-12170629)
chr8 (224-253)||(12415028-12415057)
chr8 (225-253)||(3943758-3943786)
[»] chr6 (1 HSPs)
chr6 (218-253)||(10338610-10338645)
[»] chr1 (2 HSPs)
chr1 (225-255)||(10342573-10342603)
chr1 (224-253)||(50187307-50187336)
[»] chr4 (1 HSPs)
chr4 (222-251)||(21606619-21606648)
[»] chr3 (1 HSPs)
chr3 (224-253)||(17105269-17105298)


Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 60 - 256
Target Start/End: Original strand, 11470787 - 11470983
Alignment:
Q  60 taacaagaaaggatgtgaatattatataagacctgcagtaggttttctttcagtaacaacatttatcaaagtcctccttagtagtaagtaaaactataaa 159  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11470787 taacaagtaaggatatgaatattatataagacctgcagtaggttttctttcagtaacaacatttatcaaagtcctccttagtagtaagtaaaactataaa 11470886  T
Q  160 ttcctgacacatgtatatgaatatcagacacaatattgacactgacaatggccagtatacattgataataatttaagaaaataaaagtgattgatga 256  Q
    |||||||||||| ||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11470887 ttcctgacacatatatataaatatcagacacaacactgacactgacaatggccagtatacattgataataatttaagaaaataaaagtgattgatga 11470983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 253
Target Start/End: Original strand, 10440374 - 10440409
Alignment:
Q  218 acattgataataatttaagaaaataaaagtgattga 253  Q
    |||| |||||||||||||||||||||||||||||||    
T  10440374 acatcgataataatttaagaaaataaaagtgattga 10440409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 253
Target Start/End: Original strand, 12170600 - 12170629
Alignment:
Q  224 ataataatttaagaaaataaaagtgattga 253  Q
    ||||||||||||||||||||||||||||||    
T  12170600 ataataatttaagaaaataaaagtgattga 12170629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 253
Target Start/End: Original strand, 12415028 - 12415057
Alignment:
Q  224 ataataatttaagaaaataaaagtgattga 253  Q
    ||||||||||||||||||||||||||||||    
T  12415028 ataataatttaagaaaataaaagtgattga 12415057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 253
Target Start/End: Original strand, 3943758 - 3943786
Alignment:
Q  225 taataatttaagaaaataaaagtgattga 253  Q
    |||||||||||||||||||||||||||||    
T  3943758 taataatttaagaaaataaaagtgattga 3943786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 253
Target Start/End: Original strand, 10338610 - 10338645
Alignment:
Q  218 acattgataataatttaagaaaataaaagtgattga 253  Q
    ||||||||||||||||||||||||| ||||||||||    
T  10338610 acattgataataatttaagaaaatagaagtgattga 10338645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 10342603 - 10342573
Alignment:
Q  225 taataatttaagaaaataaaagtgattgatg 255  Q
    |||||||||||||||||||||||||||||||    
T  10342603 taataatttaagaaaataaaagtgattgatg 10342573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 253
Target Start/End: Original strand, 50187307 - 50187336
Alignment:
Q  224 ataataatttaagaaaataaaagtgattga 253  Q
    ||||||||||||||||||||||||||||||    
T  50187307 ataataatttaagaaaataaaagtgattga 50187336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 251
Target Start/End: Complemental strand, 21606648 - 21606619
Alignment:
Q  222 tgataataatttaagaaaataaaagtgatt 251  Q
    ||||||||||||||||||||||||||||||    
T  21606648 tgataataatttaagaaaataaaagtgatt 21606619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 253
Target Start/End: Original strand, 17105269 - 17105298
Alignment:
Q  224 ataataatttaagaaaataaaagtgattga 253  Q
    ||||||||||||||||||||||||||||||    
T  17105269 ataataatttaagaaaataaaagtgattga 17105298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University