View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15694_low_8 (Length: 490)
Name: NF15694_low_8
Description: NF15694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15694_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 19 - 482
Target Start/End: Original strand, 32313136 - 32313599
Alignment:
| Q |
19 |
gaaattgccttgagtagtgatgttagataagcaatcaaaattagttaggatgtagtcgtgaaatttagaatttttcatattgatattcctctctgaaact |
118 |
Q |
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| T |
32313136 |
gaaattgccttgagtagtgatgttagataagcaatcaaaattagttagaatgtagtcgtgaaatttagaatttttcatattgatattcctctctgaaact |
32313235 |
T |
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| Q |
119 |
tcaaacttatatatatgatgcagaaatggttgagtgcatgaagacaatagcaaaacttgatgttgagctaactgtggaagagaggaatcttctctcagtg |
218 |
Q |
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| T |
32313236 |
tcaaacttatatatatgatgcagaaatggttgagtgcatgaagacaatagcaaaacttgatgttgagctaactgtggaagagaggaatcttctctcggtg |
32313335 |
T |
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| Q |
219 |
ggatataaaaatgtcattggtgcaaggagagcctcgtggcgcattatgtcttcaattgaacagaaagaagaggctaagggaaatgagaacaacgtgaaac |
318 |
Q |
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| T |
32313336 |
ggatataaaaatgtcattggtgcaaggagagcctcgtggcgcattatgtcttcaattgaacagaaagaagaggctaagggaaatgagaacaacgtgaaac |
32313435 |
T |
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| Q |
319 |
tgatcaagagttattgccaaaaggttgaggaggaactatcgaaaatttgcagcgacattctcgaaattattgacaaacatctgattccttcttccaccac |
418 |
Q |
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| T |
32313436 |
tgatcaagagctattgccaaaaggttgaggaggaactatcgaaaatttgcagcgacattctcgaaattattgacaaacatctgattccttcttccaccac |
32313535 |
T |
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| Q |
419 |
aggggaagctactgttttctactacaagatgtgagtcataatgttttacttgagccatattctt |
482 |
Q |
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| T |
32313536 |
aggggaagctactgttttctactacaagatgtgagtcataatgttttacttgtgccattttctt |
32313599 |
T |
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Target: chr5 (Bit Score: 143; Significance: 6e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 136 - 458
Target Start/End: Original strand, 19414649 - 19414971
Alignment:
| Q |
136 |
atgcagaaatggttgagtgcatgaagacaatagcaaaacttgatgttgagctaactgtggaagagaggaatcttctctcagtgggatataaaaatgtcat |
235 |
Q |
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|||||||||||||||| |||||||||| | | ||||||||||||||||| |||||||||||||||||||| || |||||||| ||||||||||| ||||| |
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| T |
19414649 |
atgcagaaatggttgaatgcatgaagaaagtggcaaaacttgatgttgaactaactgtggaagagaggaacctcctctcagttggatataaaaacgtcat |
19414748 |
T |
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| Q |
236 |
tggtgcaaggagagcctcgtggcgcattatgtcttcaattgaacagaaagaagaggctaagggaaatgagaacaacgtgaaactgatcaagagttattgc |
335 |
Q |
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||||||| | ||||| || |||||||||||||| |||||||| |||||||| ||| ||||||| ||||| |||| || ||| ||||||||||||| ||| |
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| T |
19414749 |
tggtgcacgaagagcttcatggcgcattatgtcctcaattgagcagaaagaggagtctaagggtaatgaacacaatgttaaaatgatcaagagttactgc |
19414848 |
T |
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| Q |
336 |
caaaaggttgaggaggaactatcgaaaatttgcagcgacattctcgaaattattgacaaacatctgattccttcttccaccacaggggaagctactgttt |
435 |
Q |
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|||||||||||||||||||| || ||||| || | |||||||| |||||||||| | |||||| ||||| |||||||| | | ||||||| ||||| |
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| T |
19414849 |
caaaaggttgaggaggaactctccaaaatctgtggtgacattctgacaattattgaccagcatctggttcctgcttccacctcggcagaagctaatgttt |
19414948 |
T |
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| Q |
436 |
tctactacaagatgtgagtcata |
458 |
Q |
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|||| | ||||||||||||||| |
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| T |
19414949 |
tctatcataagatgtgagtcata |
19414971 |
T |
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