View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15695_high_1 (Length: 388)
Name: NF15695_high_1
Description: NF15695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15695_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 10 - 322
Target Start/End: Original strand, 30229292 - 30229610
Alignment:
| Q |
10 |
cacagagctgttgaaatattgtccatgaggactcactggctcttgaacttctccaaagaatttgtccattatgctgtggtgtgtgagagagatttgatgt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30229292 |
cacagagctgttgaaatattgtccatgaggactcactggctcttgaacttctccaaagaatttgtccattatgctgtggtgtgtgagagagatttgatgt |
30229391 |
T |
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| Q |
110 |
aacacttcaactagacactgagctaccaaaagcccaaggttgcaccatgatttatactatactagttgcaattattacagttgtatatagttggtgcctt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30229392 |
aacacttcaactagacactgagctaccaaaagcccaaggttgcaccatgatttatactatactagttgcaattattacagttgtatatagttggtgcctt |
30229491 |
T |
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| Q |
210 |
tgattttgactgatacataaaatc------ggtggttattcacacatgcgatataagtaaactaaatgttaaatatataagagcggtcactataaggaaa |
303 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
30229492 |
tgattttgactgatacataaaatcgtgtgtggtggttattcacacatgcgatataagtaaactaaatgttaaatatacaaaagcggtcactataaggaaa |
30229591 |
T |
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| Q |
304 |
attagttttagcgcaacta |
322 |
Q |
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||||||||||||||||||| |
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| T |
30229592 |
attagttttagcgcaacta |
30229610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 30219783 - 30219702
Alignment:
| Q |
10 |
cacagagctgttgaaatattgtccatgaggactcactggctcttgaacttctccaaagaatttgtccattatgctgtggtgt |
91 |
Q |
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| T |
30219783 |
cacagagctattgaaatattgtccatgtggactcactggctcttgaacttcttcattgaatttgtccattatgctgtggtgt |
30219702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 30049181 - 30049264
Alignment:
| Q |
10 |
cacagagctgttgaaatattgtccatgaggactcactggctcttgaacttctccaaagaatttgtccattatgctgtggtgtgt |
93 |
Q |
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| T |
30049181 |
cacagagctgttgaagtattgaccatgaggactcactggctcttgaacttcttcattgaatttgtccattatggtgtggtgtgt |
30049264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 30063522 - 30063605
Alignment:
| Q |
10 |
cacagagctgttgaaatattgtccatgaggactcactggctcttgaacttctccaaagaatttgtccattatgctgtggtgtgt |
93 |
Q |
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| T |
30063522 |
cacagagctgttgaagtattgaccatgaggactcactggctcttgaacttcttcattgaatttgtccattatggtgtggtgtgt |
30063605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 30033082 - 30033153
Alignment:
| Q |
11 |
acagagctgttgaaatattgtccatgaggactcactggctcttgaacttctccaaagaatttgtccattatg |
82 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| || |||| |||||||||||| |
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| T |
30033082 |
acagagctgttgaaatattgtccatggggactcactggctcttgaacttcttcatagaacttgtccattatg |
30033153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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