View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15695_high_2 (Length: 371)
Name: NF15695_high_2
Description: NF15695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15695_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 211 - 352
Target Start/End: Original strand, 9248716 - 9248856
Alignment:
| Q |
211 |
atttcggttaatcattctttgcctaatttttgaatggttaatgtttcaagtttgatgtatggtttcagacatagacatctggatattttttgaaggaact |
310 |
Q |
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| T |
9248716 |
atttcggttaatcattctttgcctaatttttgaatggttaatgtttcaagtttgatgtatggtttcagacaaagacatctggata-ttatcgacctaact |
9248814 |
T |
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| Q |
311 |
ttgcataattcaactttacacccattctattgtcaaaaaact |
352 |
Q |
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| T |
9248815 |
ttgcataattcaactttacacccattctattgtcaaaaaact |
9248856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 9247710 - 9247870
Alignment:
| Q |
18 |
tagtagactttgtgtgaccggccaaataaaagtatctatggtggttggtacataattaatttctttatttctttnnnnnnntaaatatataatttcttta |
117 |
Q |
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| T |
9247710 |
tagtagactttgtgtgaccggccaaataaaagtatctacggtggttggtacataattaatttctttatttctttaaaaaaaaaaaaata----ttcttta |
9247805 |
T |
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| Q |
118 |
ttgttttggtnnnnnnnngtcatggaaaaattaaccgattgtgtcaacgcatcaatttgttctaa |
182 |
Q |
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| T |
9247806 |
ttgttttggtaaaaaaaagtcatggaaaaattaaccgattgtgtcaacgcatcaatttgttctaa |
9247870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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