View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15695_high_6 (Length: 227)
Name: NF15695_high_6
Description: NF15695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15695_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 195
Target Start/End: Original strand, 26820915 - 26821091
Alignment:
| Q |
21 |
ttaaatctcaccaaaaaaccaagaaataaggaattggaattaatatagattgaatnnnnnnntagtatgagagcgaacaacatgaaaaaatttgttgaat |
120 |
Q |
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| T |
26820915 |
ttaaatctcaccaaaaatc-aagaaataaggaattggaattaatataggttgaataaaaaaatagtatgaaagcgaacaaaatggaaaaatttgttgaag |
26821013 |
T |
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| Q |
121 |
gagtaggagattatgaggtaattattttacaaaaatttagactca---atgaaaaatgctacatcatttaaaaatttc |
195 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
26821014 |
gagtcggagattatgaggtaattattttacaaaaaattagactcaaatatgaaaaatgctacatcatttaaaaatttc |
26821091 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 198
Target Start/End: Complemental strand, 14905541 - 14905477
Alignment:
| Q |
136 |
aggtaattattttacaaaaatttagactcaatgaaa--aatgctacatcatttaaaaatttcaaa |
198 |
Q |
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||||||||||||||| |||| ||||| ||||| ||| ||||||| ||||||| ||||||||||| |
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| T |
14905541 |
aggtaattattttaccaaaaattagaatcaattaaaataatgctatatcattttaaaatttcaaa |
14905477 |
T |
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