View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15695_low_1 (Length: 578)
Name: NF15695_low_1
Description: NF15695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15695_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 281 - 566
Target Start/End: Original strand, 35456561 - 35456848
Alignment:
| Q |
281 |
taagaacaaacatttattttgt-----gtgaaaaagagaagcgtgattggagaatgaagaagagtgaaagcgaagcagcagagtatttcagtaaggattt |
375 |
Q |
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| T |
35456561 |
taagaacaaacatttatttagtttagtgtgaaaaagagaagcgtgattggagaatgaagaagagtgaaagcgaagcagcagagtatttcagtaaggattt |
35456660 |
T |
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| Q |
376 |
cgaatgggaagaacttagatcagaggttgaatcaaacccttctcttcgccaccactttcaatcatcattttctcattcttcaacacaatcacctgaatca |
475 |
Q |
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| T |
35456661 |
cgaatgggaagaacttagatcagaggttgaatcaaacccttctcttcgccaccacttcca---atcattttctcattcttcaacacaatcacctgaatca |
35456757 |
T |
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| Q |
476 |
gacgttcaagcatggaagcaatttcatacccgtcactcctccggcaaattcttcaaggtcccttttctactctttacacctctcccattca |
566 |
Q |
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| T |
35456758 |
gacgttcaagcatggaagcaatttcatacccgtcactcctccggcaaattcttcaaggtcccttttctactctttacacctctcccattca |
35456848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 74 - 136
Target Start/End: Original strand, 35456319 - 35456381
Alignment:
| Q |
74 |
caaactcaaatttgaatgaagatgttcaacctaataatatcgatattgttaattgaattgaac |
136 |
Q |
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| T |
35456319 |
caaacttaaatctgaatgaagatgttcaacctaataatattgatattgtcaattgaattgaac |
35456381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 29716016 - 29715971
Alignment:
| Q |
89 |
atgaagatgttcaacctaataatatcgatattgttaattgaattga |
134 |
Q |
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| T |
29716016 |
atgaagatattcaatctaataatattgatattgtcaattgaattga |
29715971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 34316420 - 34316383
Alignment:
| Q |
92 |
aagatgttcaacctaataatatcgatattgttaattga |
129 |
Q |
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| T |
34316420 |
aagatgttcaacttagtaatatcgatattgttaattga |
34316383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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