View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15695_low_2 (Length: 401)
Name: NF15695_low_2
Description: NF15695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15695_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 35158875 - 35159123
Alignment:
| Q |
16 |
cctattctcttaaaatgaacaataaagttagaagaaagaataatatctttactaagttagttgttgcaatcatgcttaattccaacgctgcatatcattg |
115 |
Q |
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| T |
35158875 |
cctattctcttaaaatgaacaataaagttagaagaaagaataatatctttaccaagttagttgttgcaatcatgcttaattccaacgctgcatatcattg |
35158974 |
T |
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| Q |
116 |
atggtgaaattttttattcatt-----ctttgtgctaaatagagttttcaagtcttggaacaaaatttatccttattgaattttgaagaaattaaattac |
210 |
Q |
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| T |
35158975 |
atggtgaaaaattttattcattgttttctttgtgctaaatagagttttcaagtcttggaacaaaatttctccttattgaattttgaagaaattaaaatac |
35159074 |
T |
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| Q |
211 |
aacccattttgtgttatttaaaccagcttgcatatcttatgatctaaat |
259 |
Q |
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| T |
35159075 |
aacccattttgtgttatttaaaccagcttgcatatcttatgatctaaat |
35159123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 281 - 384
Target Start/End: Original strand, 35159122 - 35159225
Alignment:
| Q |
281 |
atcaaagtgcaagactatccgaatatataaacaccattggcaacctcaggtttgccactaatgacactataattaagaaacaaacaatattgaccgagtc |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35159122 |
atcaaagtgcaagactatccgaatatataaacaccattggcaacctcaggtttgccactaatgacactataattaagaaacaaacaatattgaccgagtc |
35159221 |
T |
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| Q |
381 |
tatt |
384 |
Q |
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|||| |
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| T |
35159222 |
tatt |
35159225 |
T |
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