View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15695_low_5 (Length: 359)
Name: NF15695_low_5
Description: NF15695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15695_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 57 - 342
Target Start/End: Complemental strand, 3101811 - 3101529
Alignment:
| Q |
57 |
taaacgatattttcaatgacatcgataatatatcatttctgtagacaaaattagtttatagatataaatgaaagtgaaaatagtaatcccataatttagt |
156 |
Q |
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| T |
3101811 |
taaacgatattttcaatgacatcgataatatatcatttctgtagacaaaattagtttatagatataaatgaaagtgaaaatagtaatcccataatttagt |
3101712 |
T |
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| Q |
157 |
atagattcctttaaattttagttatttttatcannnnnnnnnnataaaattgacatgtcaagctcgtcccctgtnnnnnnnnnnnnnngattcatcataa |
256 |
Q |
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| T |
3101711 |
atagattcctttaaattttagttatttttatcattttttttttataaaattgacatgtcaagctcgtcccctgt---aaaaaaaataagattcatcataa |
3101615 |
T |
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| Q |
257 |
aaagggacgtataaggttttcaactttatagctcgtgttgtcccatcacactttagacgagttaatgttgacagttaagatggtta |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3101614 |
aaagggacgtataaggttttcaactttatagctcgtgttgtcccatcacactttagacgagttaatgttgacagttaagatggtta |
3101529 |
T |
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