View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15695_low_9 (Length: 224)

Name: NF15695_low_9

Description: NF15695

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF15695_low_9

[»] chr3 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 186; E-Value: 1e-101

Query Start/End: Original strand, 18 - 215

Target Start/End: Complemental strand, 34261106 - 34260909

Alignment:

Q	18	aatataatgatgatggatggacggcggcattctgtcgatttaccgatttctaaggctcttgtagcattgaggagagtcaggtcattgaaggatccatcaa	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34261106	aatataatgatgatggatggacggcggcattctgtcgatttaccgatttctaaggctcttgtagcattgaggagagtcaggtcattgaaggatccatcaa	34261007	T

Q	118	ctaattctgtgaccaatcattctcctttgattgacaacttacattgggaaaacagttctggcaatggttctttgatgtttccagatgcctttgcttct	215	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|
T	34261006	ctaattctgtgaccaatcattctcctttgattgacaacttacattgggaaaacagtactggcaatggttctttgatgtttccagatgcttttgattct	34260909	T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 43; E-Value: 0.000000000000001

Query Start/End: Original strand, 28 - 118

Target Start/End: Complemental strand, 43113308 - 43113218

Alignment:

Q	28	tgatggatggacggcggcattctgtcgatttaccgatttctaaggctcttgtagcattgaggagagtcaggtcattgaaggatccatcaac	118	Q
		\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\| \|\|\| \| \|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|
T	43113308	tgatggatggtaggaggcattctgttgatgtgcctatttctaaaactcttgtagcattgaggagagttaggtcattgagggatccttcaac	43113218	T

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