View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15696_high_10 (Length: 441)
Name: NF15696_high_10
Description: NF15696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15696_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 40 - 428
Target Start/End: Complemental strand, 42414141 - 42413753
Alignment:
| Q |
40 |
tgcatttaatgttgatattatgaattgtgataacatctgttaactagatagattaacaatccaaccctccctaactgatatacaagaaacatcgaaaagc |
139 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42414141 |
tgcatttaatgttgatattgtgaattgtgataacatctgttaactagatagattaacaatccaaccctccctaactgatatacaagaaacatcgaaaagc |
42414042 |
T |
|
| Q |
140 |
aagtcaagaaatctggtagcagtacaacttcacacaatcatcttgcttttctataatttccaggccaagagtttagttcgggcagaccaccattttggtc |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42414041 |
aagtcaagaaatctggtagcagtacaacttcacacaatcatcttgcttttctataatttccaggccaagagtttagttcgggcagaccaccattttggtc |
42413942 |
T |
|
| Q |
240 |
cctgaaagtgtaactcactgtcacaataatccaggacacacgaaaacacaaaacaatctctgactcttcaatccgttagtgattttcgtccctaaaatct |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42413941 |
cctgaaagtgtaactcactgtcacaataatccaggacacacgaaaacacaaaacaatctctgattcttcaatccgttagtgattttcgtccctaaaatct |
42413842 |
T |
|
| Q |
340 |
aaaaagcttatgcaactttttagggacaagtggcttgatgatgtggcttcagggaccaagcggtttgcctgttttttccctcaacatat |
428 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42413841 |
aaaaagcttatgtcactttttaggggcaagtggcttgatgacgtggcttcagggaccaagtggtttgcctgttttttccctcaacatat |
42413753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 42415462 - 42415430
Alignment:
| Q |
20 |
acccattcttaaatggaaactgcatttaatgtt |
52 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
42415462 |
acccattcttaaatggaaactgcatttaatgtt |
42415430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 395
Target Start/End: Complemental strand, 32942107 - 32942066
Alignment:
| Q |
354 |
actttttagggacaagtggcttgatgatgtggcttcagggac |
395 |
Q |
| |
|
|||||||| ||| || |||||||||||||||||||||||||| |
|
|
| T |
32942107 |
actttttaaggaaaaatggcttgatgatgtggcttcagggac |
32942066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 264
Target Start/End: Complemental strand, 14242870 - 14242834
Alignment:
| Q |
228 |
accattttggtccctgaaagtgtaactcactgtcaca |
264 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
14242870 |
accattttggtccctaaaagtgtaactcgctgtcaca |
14242834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University