View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15696_high_11 (Length: 440)
Name: NF15696_high_11
Description: NF15696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15696_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 33221304 - 33221051
Alignment:
| Q |
1 |
tgcaaatgcaacttcgttgaccatgtttactcagtggcaatgtaagatctttatctgatgggagcaatgtaagatcnnnnnnnnnnnnnnnnnnnnnnnn |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33221304 |
tgcaaatgcaacttcattgaccatgtttactcagtggcaatgtaagatctttatctgatgggagcaatgtaagatctttttatttcatttttttctcttt |
33221205 |
T |
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| Q |
101 |
nattagggttatgataatgatctgatctgaatctctcaatcatttttcagtataccaaccagtttttgtgtcttaaaaccaatttaattttcaatccctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33221204 |
tattagggttatgataatgatctgatctgaatctctcaatcatttttcagtataccaaccaatttttgtgtcttaaaaccaatttaattttcaatccctt |
33221105 |
T |
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| Q |
201 |
ttaacatgcatgttgatccatcaaatttcatccattaatatgattttatttgta |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33221104 |
ttaacatgcatgttgatccatcaaatttcatccattaatatgattttatttgta |
33221051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 338 - 425
Target Start/End: Complemental strand, 33220967 - 33220880
Alignment:
| Q |
338 |
cctcgatgttcttaatctttgccatgttcatattgctcatgttcatcatcgacgcttaaaaataaaaatttgtttgatgttcagcatg |
425 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33220967 |
cctcgatgttcttaatctttgccatgttcatattgctcatgttcatcatcgacacttaaaaataaaaatttgtttgatgttcagcatg |
33220880 |
T |
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