View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15696_high_13 (Length: 402)

Name: NF15696_high_13
Description: NF15696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15696_high_13
NF15696_high_13
[»] chr4 (5 HSPs)
chr4 (19-399)||(24666465-24666844)
chr4 (19-399)||(18363269-18363645)
chr4 (19-399)||(36599283-36599659)
chr4 (52-399)||(34941558-34941905)
chr4 (223-298)||(8752390-8752465)
[»] chr1 (2 HSPs)
chr1 (21-295)||(26240460-26240735)
chr1 (315-399)||(26240779-26240863)
[»] chr3 (4 HSPs)
chr3 (223-399)||(53242722-53242900)
chr3 (25-190)||(43479101-43479261)
chr3 (200-351)||(43479315-43479456)
chr3 (130-184)||(53242983-53243037)
[»] chr2 (3 HSPs)
chr2 (236-399)||(19697413-19697568)
chr2 (345-399)||(13265597-13265651)
chr2 (28-181)||(19697645-19697795)
[»] chr8 (2 HSPs)
chr8 (286-390)||(32566462-32566563)
chr8 (134-185)||(32566278-32566329)


Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 19 - 399
Target Start/End: Original strand, 24666465 - 24666844
Alignment:
Q  19 cgatgcccattttttatcaccttcatttgaactaaagtttcaattgatttgtttgtgtgttaaaaggccataaccgaacattattcttgttgcgtttttc 118  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24666465 cgatgcccatttt-tatcaccttcatttgaactaaagtttcaattgatttgtttgtgtgttaaaaggccataaccgaacattatccttgttgcgtttttc 24666563  T
Q  119 accatgaacatgaagtattaaagtttcaaattttaggggtttctcttttgacacaatagttatcaacaccaagaaattggttcctgtcactttcccatat 218  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24666564 accatgaacatgaagtattaaattttcaaattttaggggtttctcttttgacacaatagttatcaacaccaagaaattggttcctgtcactttcccatat 24666663  T
Q  219 ctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaaggatgaagaaatataataggg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24666664 ctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaaagatgaagaaatataataggg 24666763  T
Q  319 acaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaaaccattgattcaatcaaacggtat 399  Q
    ||||||||  ||||||||||||||| ||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||    
T  24666764 acaagattgtatgttaaaatgtctagatgttctcaatcttattttcaataaatctcaaccattgattcaatcaaacggtat 24666844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 399
Target Start/End: Original strand, 18363269 - 18363645
Alignment:
Q  19 cgatgcccattttttatcaccttcatttgaactaaagtttcaattgatttgtttgtgtgttaaaaggccataaccgaacattattcttgttgcgtttttc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  18363269 cgatgcccattttttatcaccttcatttgaactaaagtttcaattgatttgtttgtgtgttaaaaggccataaccgaacattattcttgttgtgtttttc 18363368  T
Q  119 accatgaacatgaagtattaaagtttcaaattttaggggtttctcttttgacacaatagttatcaacaccaagaaattggttcctgtcactttcccatat 218  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18363369 accatgaacatgtagtattaaagtttcaaattttaggggtttctcttttgacacaatagttatcaacaccaagaaattggttcatgtcactttcccatat 18363468  T
Q  219 ctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaaggatgaagaaatataataggg 318  Q
    |||||||||||||||||||||||||||||||||||||||  || | ||||||||||||||||||||| |||||||  |||||||||||||||||||||||    
T  18363469 ctggtttttcattttcaaatggatgtagatgttttctgc--gcgtattctagatttacagatttcaggggagttg--aaggatgaagaaatataataggg 18363564  T
Q  319 acaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaaaccattgattcaatcaaacggtat 399  Q
    |||||| |  ||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||| || |||||    
T  18363565 acaagaatgtatgttaaaatgtctagatgttctcaattttattttcaataaatctcaaccattgattcaatcgaatggtat 18363645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 399
Target Start/End: Complemental strand, 36599659 - 36599283
Alignment:
Q  19 cgatgcccattttttatcaccttcatttgaactaaagtttcaattgatttgtttgtgtgttaaaaggccataaccgaacattattcttgttgcgtttttc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36599659 cgatgcccattttttatcaccttcatttgaactaaagtttcaattgatttgtttgtgtgttaaaaggccataaccgaacattattcttgttgtgtttttc 36599560  T
Q  119 accatgaacatgaagtattaaagtttcaaattttaggggtttctcttttgacacaatagttatcaacaccaagaaattggttcctgtcactttcccatat 218  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36599559 accatgaacatgtagtattaaagtttcaaattttaggggtttctcttttgacacaatagttatcaacaccaagaaattggttcatgtcactttcccatat 36599460  T
Q  219 ctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaaggatgaagaaatataataggg 318  Q
    |||||||||||||||||||||||||||||||||||||||  || | ||||||||||||||||||||| |||||||  |||||||||||||||||||||||    
T  36599459 ctggtttttcattttcaaatggatgtagatgttttctgc--gcgtattctagatttacagatttcaggggagttg--aaggatgaagaaatataataggg 36599364  T
Q  319 acaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaaaccattgattcaatcaaacggtat 399  Q
    |||||| |  ||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||| || |||||    
T  36599363 acaagaatgtatgttaaaatgtctagatgttctcaattttattttcaataaatctcaaccattgattcaatcgaatggtat 36599283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 52 - 399
Target Start/End: Complemental strand, 34941905 - 34941558
Alignment:
Q  52 aaagtttcaattgatttgtttgtgtgttaaaaggccataaccgaacattattcttgttgcgtttttcaccatgaacatgaagtattaaagtttcaaattt 151  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34941905 aaagtttcaattgatttgtttgtgtgttacaaggccataaccgaacattattcttgttgcgtttt-caccatgaacatgaagtattaaagtttcaaattt 34941807  T
Q  152 taggggtttctcttttgacacaatagttatcaacaccaagaaattgg-ttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgt 250  Q
    || |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34941806 taagggtttctcttttgacacaatagttatcaacaccaagaaattgggttcctgtcattttcccatatctggtttttcattttcaaatggatgtagatgt 34941707  T
Q  251 tttctgcaagcatcttctagatttacagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttc 350  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||| ||||||||||||  ||||||||||||||| ||||||    
T  34941706 tttctgcaagcatcttctagatttacagatttcaggggagttgaagaggatgaagagatataacagggacaagattgtatgttaaaatgtctagatgttc 34941607  T
Q  351 tcaattttatttttaataaatctaaaccattgattcaatcaaacggtat 399  Q
    |||| |||||||| ||||||||| |||| ||||||||||||||||||||    
T  34941606 tcaactttattttcaataaatctcaaccgttgattcaatcaaacggtat 34941558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 298
Target Start/End: Complemental strand, 8752465 - 8752390
Alignment:
Q  223 tttttcattttcaaatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaag 298  Q
    |||||||||||| ||| ||||||||||||||| ||||||| | | | |||| ||  ||||||||||||||||||||    
T  8752465 tttttcattttcgaattgatgtagatgttttcagcaagcaacctatggattcactaatttcagaggagttgaaaag 8752390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 21 - 295
Target Start/End: Original strand, 26240460 - 26240735
Alignment:
Q  21 atgcccattttttatcaccttcatttgaactaaagtttcaattgatttgtttgtgtgttaaaaggccataaccgaacattattcttgttgcgtttttcac 120  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  26240460 atgcccattttttatcaccttcatttgaaccaaagtttcaattgatttgtttgtgtgttaaaagtccataaccgaacattattcttgttgtgtttttcac 26240559  T
Q  121 catgaacatgaagtattaaagtttcaaattttaggggtttctcttttgacacaatagttatcaacaccaagaaatt-ggttcctgtcactttcccatatc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  26240560 catgaacatgaagtattaaagtttcaaattttaggggtttctcttttgacacaatagttatcaacaccaagaaattgggtttctgtcactttcccatatc 26240659  T
Q  220 tggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaa 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||    
T  26240660 tggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagatttacatatttcaagggagttgaa 26240735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 315 - 399
Target Start/End: Original strand, 26240779 - 26240863
Alignment:
Q  315 agggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaaaccattgattcaatcaaacggtat 399  Q
    ||||||||||||  ||||||||||||||| ||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||    
T  26240779 agggacaagattgtatgttaaaatgtctagatgttctcaatattattttcaataaatctcaaccattgattcaatcaaacggtat 26240863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 8e-37; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 223 - 399
Target Start/End: Complemental strand, 53242900 - 53242722
Alignment:
Q  223 tttttcattttcaaatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaaggatgaagaaatataataggg-aca 321  Q
    |||||||||| | ||||||| ||||||||||||||| | ||||| ||||||||||||||| |   |||||||| |||||||| ||||||||||||| |||    
T  53242900 tttttcatttccgaatggatatagatgttttctgcatgtatcttttagatttacagattttaagagagttgaagaggatgaacaaatataatagggaaca 53242801  T
Q  322 agatttaatgttaaaatgtctatatgttctc-aattttatttttaataaatctaaaccattgattcaatcaaacggtat 399  Q
    | |||  | || |||||||||| |||||||| ||||||||||| ||||||||| ||||||||||||||||||| |||||    
T  53242800 aaattgtaagtgaaaatgtctagatgttctcaaattttattttcaataaatcttaaccattgattcaatcaaatggtat 53242722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 25 - 190
Target Start/End: Original strand, 43479101 - 43479261
Alignment:
Q  25 ccattttttatcaccttcatttgaactaaagtttcaattgatttgtttgtgtgttaaaaggccataaccgaacattatt-cttgttgcgtttttcaccat 123  Q
    ||||||||||  |||||||||| |||| ||||||||||| |||||||||||||||||||| ||  |||| ||||||||| || || | |||||||| |||    
T  43479101 ccattttttactaccttcatttcaactgaagtttcaatttatttgtttgtgtgttaaaagaccggaacctaacattatttctggtagtgtttttcatcat 43479200  T
Q  124 gaacatgaagtattaaagtttcaaattttaggggtttctcttttgacacaatagttatcaacaccaa 190  Q
    |      ||||||||||||||||||||||||  ||||||||| |||||| ||| |||||||||||||    
T  43479201 g------aagtattaaagtttcaaattttagaagtttctcttctgacacgataattatcaacaccaa 43479261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 200 - 351
Target Start/End: Original strand, 43479315 - 43479456
Alignment:
Q  200 tcctgtcactttcccatatctggtttttcatttt-caaatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaag 298  Q
    |||| ||||||| || | |||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||           | |||||||| |     
T  43479315 tcctatcacttttccgtctctgttttttcatttttcgaatggatgtagatgttttctgcaagcatcttctagattt-----------aagagttgaataa 43479403  T
Q  299 gatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttct 351  Q
    ||||||||||||||||||| |||| |||  |||| |||||||||| |||||||    
T  43479404 gatgaagaaatataataggaacaatattgtatgtgaaaatgtctagatgttct 43479456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 53243037 - 53242983
Alignment:
Q  130 gaagtattaaagtttcaaattttaggggtttctcttttgacacaatagttatcaa 184  Q
    |||||||||||||||||||||  ||||||||||||| | |||||| |||||||||    
T  53243037 gaagtattaaagtttcaaattccaggggtttctcttctaacacaagagttatcaa 53242983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 236 - 399
Target Start/End: Complemental strand, 19697568 - 19697413
Alignment:
Q  236 aatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaa 335  Q
    ||||||||||||||||||| |||||||||||||| ||||       | || ||||||||||| ||||||||||||||||||||||||||||  |||||||    
T  19697568 aatggatgtagatgttttccgcaagcatcttctaaattt-------ttagtggagttgaaaatgatgaagaaatataatagggacaagattgtatgttaa 19697476  T
Q  336 aatgtctatatgttctcaattttatttttaataaatctaaaccattgattcaatcaaacggtat 399  Q
    |||||||| |||||||||||||| |||| || |||||| || ||||||||||||||||| ||||    
T  19697475 aatgtctagatgttctcaatttt-ttttcaaaaaatctcaaacattgattcaatcaaacagtat 19697413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 345 - 399
Target Start/End: Complemental strand, 13265651 - 13265597
Alignment:
Q  345 atgttctcaattttatttttaataaatctaaaccattgattcaatcaaacggtat 399  Q
    ||||||||| ||||||||||||||| ||||||||||||||| |||| ||||||||    
T  13265651 atgttctcatttttatttttaataattctaaaccattgatttaatccaacggtat 13265597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 181
Target Start/End: Complemental strand, 19697795 - 19697645
Alignment:
Q  28 ttttttatcaccttcatttgaactaaagtttcaattgatttgtttgtgtgt-taaaaggccataaccgaacattattcttgttgcgtttttcaccatgaa 126  Q
    ||||||||||||||||||| ||   || |||||||| |||| ||||| ||| | | |||| | |||| |||||||||||||| | |||||||||||||||    
T  19697795 ttttttatcaccttcatttcaagcgaaatttcaatttatttatttgtttgtgttagaggctagaacctaacattattcttgtagagtttttcaccatgaa 19697696  T
Q  127 catgaagtattaaag-tttcaaattttagggg-tttctcttttgacacaatagttat 181  Q
    |      || ||||| |||||||||| ||||| ||| | ||||||||||||||||||    
T  19697695 c------taataaagttttcaaatttcaggggtttttttttttgacacaatagttat 19697645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 286 - 390
Target Start/End: Original strand, 32566462 - 32566563
Alignment:
Q  286 aggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaaaccattgatt 385  Q
    |||||||||| | ||||| ||||||||||||||||||||||  |||| ||||||| || |||||||||||||  |||| |||||||||  |||||||| |    
T  32566462 aggagttgaataagatga-gaaatataatagggacaagattgtatgtgaaaatgtttagatgttctcaattt--ttttcaataaatcttgaccattgaat 32566558  T
Q  386 caatc 390  Q
    |||||    
T  32566559 caatc 32566563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 185
Target Start/End: Original strand, 32566278 - 32566329
Alignment:
Q  134 tattaaagtttcaaattttaggggtttctcttttgacacaatagttatcaac 185  Q
    |||||||||||||||||| ||| ||||||||| |||||| ||| ||||||||    
T  32566278 tattaaagtttcaaatttcaggagtttctcttctgacactataattatcaac 32566329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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