View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15696_high_20 (Length: 315)
Name: NF15696_high_20
Description: NF15696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15696_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 5 - 314
Target Start/End: Complemental strand, 38827016 - 38826707
Alignment:
| Q |
5 |
caaatgttttgaatttattaaccagatactcaaccatagcatggggtgcttcactcaaaaaaggggttgccccaaatgtggactatggaaccaaagcaca |
104 |
Q |
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| T |
38827016 |
caaatgttttgaattaattaaccagatactcaaccatagcatggggtgcttcactcaaaaaaggggttgccccaaatgtggactatggaaccaaagcaca |
38826917 |
T |
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| Q |
105 |
tagcacagctgatgctgtattcaatttcctatctgcattgggagatgtagcatttgcatatgcaggacacaacgtggttcttgaaatccaagcaactatg |
204 |
Q |
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| T |
38826916 |
tagcacagctgatgctgtattcaatttcctatctgcattgggagatgtagcatttgcatatgcaggacacaacgtggttcttgaaatccaagcaactatg |
38826817 |
T |
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| Q |
205 |
ccatcaaccccagagaatccttctaagaaacccatgtggaaaggagttatttttgcatacataggagttgcattctgctacttccctgttgcgtttattg |
304 |
Q |
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| T |
38826816 |
ccatcaaccccagagaatccttctaagaaacccatgtggaaaggagttatttttgcatacataggagttgcattctgctacttccctgttgcctttattg |
38826717 |
T |
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| Q |
305 |
aatactatat |
314 |
Q |
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| T |
38826716 |
gatactatat |
38826707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 296
Target Start/End: Complemental strand, 7971319 - 7971177
Alignment:
| Q |
154 |
gcatttgcatatgcaggacacaacgtggttcttgaaatccaagcaactatgccatcaaccccagagaatccttctaagaaacccatgtggaaaggagtta |
253 |
Q |
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| T |
7971319 |
gcatttgcctttgccggacacaacgtggtgctggagatccaagcaacaattccgtctacacctgagaaaccatctaagggtccaatgtggaaaggagtta |
7971220 |
T |
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| Q |
254 |
tttttgcatacataggagttgcattctgctacttccctgttgc |
296 |
Q |
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| T |
7971219 |
ttgttgcatacattgttgttgctttgtgctactttcctgttgc |
7971177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 314
Target Start/End: Original strand, 34409785 - 34409956
Alignment:
| Q |
143 |
tgggagatgtagcatttgcatatgcaggacacaacgtggttcttgaaatccaagcaactatgccatcaaccccagagaatccttctaagaaacccatgtg |
242 |
Q |
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| T |
34409785 |
tgggagaagtagcattttcttatgcaggtcacaatgtagttctcgaaatccaagcaacaataccttctactcctgaccagccttccaagatagcaatgtg |
34409884 |
T |
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| Q |
243 |
gaaaggagttatttttgcatacataggagttgcattctgctacttccctgttgcgtttattgaatactatat |
314 |
Q |
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| T |
34409885 |
gaaaggagtcgttgttgcatatttaggagtggccatttgctaccttccagttgcatttgttggatactatat |
34409956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 296
Target Start/End: Complemental strand, 41381753 - 41381614
Alignment:
| Q |
157 |
tttgcatatgcaggacacaacgtggttcttgaaatccaagcaactatgccatcaaccccagagaatccttctaagaaacccatgtggaaaggagttattt |
256 |
Q |
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| T |
41381753 |
tttgcctatgcaggacacaatgtggtgttggaaattcaatctacaatcccatctacacctgagaaaccatctaagggtccaatgtggaaaggagttatct |
41381654 |
T |
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| Q |
257 |
ttgcatacataggagttgcattctgctacttccctgttgc |
296 |
Q |
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| T |
41381653 |
ttgcctacatggttgttgctttgtgctactttcctgttgc |
41381614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 14198212 - 14198148
Alignment:
| Q |
145 |
ggagatgtagcatttgcatatgcaggacacaacgtggttcttgaaatccaagcaactatgccatc |
209 |
Q |
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| T |
14198212 |
ggagatgtggcttttgcttatgccggacacaacgtggtgttagaaatccaagcaacaattccatc |
14198148 |
T |
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