View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15696_high_24 (Length: 274)
Name: NF15696_high_24
Description: NF15696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15696_high_24 |
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| [»] scaffold0996 (1 HSPs) |
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| [»] scaffold0067 (1 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 1985516 - 1985259
Alignment:
| Q |
1 |
gaagctatcaaagtggccatatca--cgtaatgcccactcttttgtttgaaacggattgcaaatctctatcatatgctatttgtttcacaaaggttcctc |
98 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1985516 |
gaagctatcaaagtggccatatcaaacgtaatgcccactgctttgtttgaaacggattgcaaatctctatcatatgctatttgttccacaaaggttcctc |
1985417 |
T |
|
| Q |
99 |
taaatgaatttggagacattgtccttcaatgtagaagtctcttacttaatagacccgactttttaatgccgcatgttcggaggcaagctaatagctcatt |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1985416 |
taaatgaatttggagacattgtccttcaatgtagaagtctcttacttaatagacccgactttttagtgccgcatgttcggaggcaagctaatagctcatt |
1985317 |
T |
|
| Q |
199 |
gcacagccagagcatccttatctcatcctagccccatattttcaattatgtgccaact |
256 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1985316 |
gcacagccagagcatccttatctcatcctaaccccatattttcaattatgtgccaact |
1985259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 23151234 - 23151301
Alignment:
| Q |
125 |
caatgtagaagtctcttacttaatagacccgactttttaatgccgcatgttcggaggcaagctaatag |
192 |
Q |
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||||||||||||||||||||| ||| |||||||||| | || || ||||| |||||||||| ||||| |
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|
| T |
23151234 |
caatgtagaagtctcttacttgataaacccgactttgcagtgtcgtatgttaggaggcaagcaaatag |
23151301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 14 - 191
Target Start/End: Complemental strand, 40852098 - 40851919
Alignment:
| Q |
14 |
tggccatatca--cgtaatgcccactcttttgtttgaaacggattgcaaatctctatcatatgctatttgtttcacaaaggttcctctaaatgaatttgg |
111 |
Q |
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||||||||||| || ||||| |||| ||||||||||||| ||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||| |
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| T |
40852098 |
tggccatatcaaacggaatgcacactattttgtttgaaacagattgcaaatctctaccagatgctatttgttccacaaaggttcctctaaatgaatttgg |
40851999 |
T |
|
| Q |
112 |
agacattgtccttcaatgtagaagtctcttacttaatagacccgactttttaatgccgcatgttcggaggcaagctaata |
191 |
Q |
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|||| ||||| |||||||||||||||||||| |||||||||| |||| | || || | |||||||| |||||| |||||| |
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| T |
40851998 |
agaccttgtctttcaatgtagaagtctcttatttaatagacctgactatgtagtgtctcatgttcgtaggcaaactaata |
40851919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 40851690 - 40851644
Alignment:
| Q |
202 |
cagccagagcatccttatctcatcctag-ccccatattttcaattat |
247 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||| ||||||||||| |
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| T |
40851690 |
cagccagagcatctttatctcatcctagtccccatgttttcaattat |
40851644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 41 - 191
Target Start/End: Original strand, 44657258 - 44657408
Alignment:
| Q |
41 |
ttgtttgaaacggattgcaaatctctatcatatgctatttgtttcacaaaggttcctctaaatgaatttggagacattgtccttcaatgtagaagtctct |
140 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| ||||||| ||| |||||||||||||||||| | ||| ||||||||| |||||||| |
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| T |
44657258 |
ttgtttgaaacggattgcaaatctctatcagatgctatttgttccacaaagattcttctaaatgaatttggagatctcgtctttcaatgtaaaagtctct |
44657357 |
T |
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| Q |
141 |
tacttaatagacccgactttttaatgccgcatgttcggaggcaagctaata |
191 |
Q |
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||||||||||| |||||||| || | |||||||| ||||| || |||||| |
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| T |
44657358 |
tacttaatagatccgactttgtagtatcgcatgtttggaggtaaactaata |
44657408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 27466774 - 27466810
Alignment:
| Q |
124 |
tcaatgtagaagtctcttacttaatagacccgacttt |
160 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |
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| T |
27466774 |
tcaatgtagaagtctcttacttaataaacccgacttt |
27466810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 6352541 - 6352477
Alignment:
| Q |
128 |
tgtagaagtctcttacttaatagacccgactttttaatgccgcatgttcggaggcaagctaatag |
192 |
Q |
| |
|
||||||||||||||||||| || ||||| ||| || || ||||| ||||||||||||| ||||| |
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| T |
6352541 |
tgtagaagtctcttacttaccagtcccgattttgtagtgtcgcatattcggaggcaagcaaatag |
6352477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 182
Target Start/End: Complemental strand, 48097365 - 48097277
Alignment:
| Q |
94 |
tcctctaaatgaatttggagacattgtccttcaatgtagaagtctcttacttaatagacccgactttttaatgccgcatgttcggaggc |
182 |
Q |
| |
|
|||||||||||||||||| || || | | ||||||| || ||||||||| |||||||| |||||| || || |||||||||||||| |
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| T |
48097365 |
tcctctaaatgaatttggtgatcttattttacaatgtaaaaatctcttactaaatagaccagactttgtagtgttgcatgttcggaggc |
48097277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0996 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0996
Description:
Target: scaffold0996; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 1652 - 1597
Alignment:
| Q |
137 |
ctcttacttaatagacccgactttttaatgccgcatgttcggaggcaagctaatag |
192 |
Q |
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|
||||| || ||||||||||||||| || || || |||||||||||||||||||||| |
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|
| T |
1652 |
ctcttgctcaatagacccgactttgtagtgtcgtatgttcggaggcaagctaatag |
1597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 11100 - 11033
Alignment:
| Q |
125 |
caatgtagaagtctcttacttaatagacccgactttttaatgccgcatgttcggaggcaagctaatag |
192 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||| | || || ||||| |||||||||| ||||| |
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|
| T |
11100 |
caatgtagaagtctcttacttgataaacccgactttgcagtgtcgtatgttaggaggcaagcaaatag |
11033 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 41147719 - 41147786
Alignment:
| Q |
125 |
caatgtagaagtctcttacttaatagacccgactttttaatgccgcatgttcggaggcaagctaatag |
192 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||| | || || ||||| |||||||||| ||||| |
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|
| T |
41147719 |
caatgtagaagtctcttacttgataaacccgactttgcagtgtcgtatgttaggaggcaagcaaatag |
41147786 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 192
Target Start/End: Original strand, 513816 - 513884
Alignment:
| Q |
124 |
tcaatgtagaagtctcttacttaatagacccgactttttaatgccgcatgttcggaggcaagctaatag |
192 |
Q |
| |
|
|||||||| || ||||| || ||||||||||||||| || || || ||||| |||||||||||||||| |
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|
| T |
513816 |
tcaatgtaagagcctcttgctcaatagacccgactttgtagtgtcgtatgtttggaggcaagctaatag |
513884 |
T |
|
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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 32499511 - 32499578
Alignment:
| Q |
125 |
caatgtagaagtctcttacttaatagacccgactttttaatgccgcatgttcggaggcaagctaatag |
192 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||| | || || ||||| |||||||||| ||||| |
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|
| T |
32499511 |
caatgtagaagtctcttacttgataaacccgactttgcagtgtcgtatgttaggaggcaagcaaatag |
32499578 |
T |
|
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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 160
Target Start/End: Complemental strand, 188495 - 188461
Alignment:
| Q |
126 |
aatgtagaagtctcttacttaatagacccgacttt |
160 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |
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|
| T |
188495 |
aatgtagaagtctcttacttattagacccgacttt |
188461 |
T |
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