View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15696_high_25 (Length: 269)
Name: NF15696_high_25
Description: NF15696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15696_high_25 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 52 - 254
Target Start/End: Complemental strand, 38596605 - 38596402
Alignment:
| Q |
52 |
actgtgtcttgatgatgccatcaagaatggtgtatttgaccattatgcaagaattctcgtggacatggatcttttaagaagattatttgattannnnnnn |
151 |
Q |
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| T |
38596605 |
actgtgtcttgatgatgccatcaagaatggtgtatttgaccattatgcaagaattctcgtggacatggatcttttaagaagattatttgataattttttt |
38596506 |
T |
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| Q |
152 |
-gaaccaaaatggtttgaagaagaatgacctctaattttcattttgatggtaagatataagagaacaattttattccctaatgtttgtttcatgcgtaga |
250 |
Q |
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| T |
38596505 |
tgaaccaaaatggtttgaagaagaatgacctctaattttcattttgatggtaagatataagagaacaattttattccctaatgtttgtttcatgcgtaga |
38596406 |
T |
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| Q |
251 |
atgt |
254 |
Q |
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|||| |
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| T |
38596405 |
atgt |
38596402 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 49073794 - 49073838
Alignment:
| Q |
206 |
tataagagaacaattttattccctaatgtttgtttcatgcgtagaa |
251 |
Q |
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| T |
49073794 |
tataagagaacaaatt-attccataatgtttgtttcatgcgtagaa |
49073838 |
T |
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