View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15696_high_29 (Length: 262)
Name: NF15696_high_29
Description: NF15696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15696_high_29 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 33221426 - 33221668
Alignment:
| Q |
4 |
tttatagacacactgcaatgttaccttgaatacccttatatggccccacttaagttgttgagagtgaaaacaaagatacactgacacgtacgaggtttta |
103 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33221426 |
tttatagacacactacaatgttacctcgaatacccttatatggccccacttaagttgttgagagtgaaaacaaagatacactgacacgtacgaggtttta |
33221525 |
T |
|
| Q |
104 |
aggacatcaatgtcttttccacttatttgagacacatgattcacgctactttcattcggcgagggttgtgttgtgtgtgaagtgaagaagtatcttgtan |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33221526 |
aggacatcaatgtcttttccacttatttgagacacatgattcacgctactttcattcggcgagggttgtgttgtgtgtgaagtgaagaagtatcttgta- |
33221624 |
T |
|
| Q |
204 |
nnnnnnnctatcaattaattttgttgtgttttgcatctctgctg |
247 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33221625 |
tttttttctatcaattgattttgttgtgttttgcatctctgctg |
33221668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University