View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15696_high_30 (Length: 250)
Name: NF15696_high_30
Description: NF15696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15696_high_30 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 26206581 - 26206749
Alignment:
| Q |
1 |
ttttcttttttgtgttgatatattagaacaataagattagtttattaaagtttgagtagcatattctatgttgaaatacaaaaattaaaacatatgtcta |
100 |
Q |
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| T |
26206581 |
ttttcttttttgtgttgatatatgagaacaataagattagtttattaaggtttgagtagcatattctatgttgaaatactaaaactaaa-catatgtcta |
26206679 |
T |
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| Q |
101 |
tgtctttgacaatatcaattttggttaaagttatcataaattgcataataaattttgaaataataaaact |
170 |
Q |
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| T |
26206680 |
tgtctttgacaatatcaattttggttaaagttatcataaattgcataataaattttgaaatagtaaaact |
26206749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 26226211 - 26226314
Alignment:
| Q |
1 |
ttttcttttttgtgttgatatattagaacaataagattagtttattaaagtttgagtagcatattctatgttgaaatacaaaaattaaaacatatgtcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| | ||||||||||||| |
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| T |
26226211 |
ttttcttttttgtgttgatatattagaacaataagattagtttattaaggtttgagtagcatattctatgttgaaatactaaaact-aaacatatgtcta |
26226309 |
T |
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| Q |
101 |
tgtct |
105 |
Q |
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||||| |
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| T |
26226310 |
tgtct |
26226314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 26206806 - 26206871
Alignment:
| Q |
167 |
aacttaggatatgccaattgccaaccatcaaatataaaaggaaaagaacaattagaggagacaaat |
232 |
Q |
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| T |
26206806 |
aacttaggatatgccaattgccaaccatcaaatacaaaaggaaaagaacaattagaggagacaaat |
26206871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 26226364 - 26226411
Alignment:
| Q |
185 |
tgccaaccatcaaatataaaaggaaaagaacaattagaggagacaaat |
232 |
Q |
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||||||||| |||||| |||||||||||||||| ||||||| |||||| |
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| T |
26226364 |
tgccaaccagcaaatacaaaaggaaaagaacaagtagaggaaacaaat |
26226411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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