View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15696_high_32 (Length: 234)
Name: NF15696_high_32
Description: NF15696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15696_high_32 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 29063060 - 29063280
Alignment:
| Q |
1 |
ttcaatttaggttacgctctattacacatgctgagctttggccaattttcttgggtgtcaaattaggtacggagagagaagtcccaataatcattgttga |
100 |
Q |
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| T |
29063060 |
ttcaatttaggttacgctctattacacatgttgagctttggtcaattttcttgggtgtcaaattaggtatggagagagaagtcccaataatcattgttga |
29063159 |
T |
|
| Q |
101 |
atcaaattctcaagttgtagtaggnnnnnnngaatgatggttttctttcatattataatttgattaaaagtattttaaatcgaaactggttaggatgcat |
200 |
Q |
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| T |
29063160 |
atcaaattctcaagttgtagtaggtttttttgaataatagttttctttcatattataatttgattaaaagtattttaaatcgaaactggttaggatgcat |
29063259 |
T |
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| Q |
201 |
cttaacttggttgttgatagt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
29063260 |
cttaacttggttgttgatagt |
29063280 |
T |
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Back To:
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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 24318420 - 24318469
Alignment:
| Q |
16 |
gctctattacacatgctgagctttggccaattttcttgggtgtcaaatta |
65 |
Q |
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||||||| | |||||||||||||||| | ||||||||||| ||||||||| |
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| T |
24318420 |
gctctatcatacatgctgagctttggactattttcttgggcgtcaaatta |
24318469 |
T |
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