View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15696_high_35 (Length: 211)
Name: NF15696_high_35
Description: NF15696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15696_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 259788 - 259986
Alignment:
| Q |
1 |
ttcaacatctaattcctcgtatgagtttgtggagcatggttgtggagatgacgtggtttgtttctaaggggattgaattacgtttcagatctaaaataaa |
100 |
Q |
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| T |
259788 |
ttcaacatctaattcctcgtatgagtttgtggagcatggttgtggagatgacgtggtttgtttctaaggggattgaattacgtttcagatctaaaataaa |
259887 |
T |
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| Q |
101 |
acccataannnnnnnnaaaccttttcatcttttcagatgaagtttcagatctaaaatcaataacccagaatttattaaatctatttatctcttcatctc |
199 |
Q |
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| T |
259888 |
acccataattttttttaaaccttttcatcttttcagatgaagtttcagatcaaaaatcaataacccagaatttattaaatgtatttatctcttcatctc |
259986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 27225660 - 27225857
Alignment:
| Q |
1 |
ttcaacatctaattcctcgtatgagtttgtggagcatggttgtggagatgacgtggtttgtttctaaggggattgaattacgtttcagatctaaaataaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27225660 |
ttcaacatctaattcctcgtatgagtttgtggagcatggttgtggagatgacgtggtttgtttctaaggggattgaattacgtttcagatctaaaataaa |
27225759 |
T |
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| Q |
101 |
acccataannnnnnnnaaaccttttcatcttttcagatgaagtttcagatctaaaatcaataacccagaatttattaaatctatttatctcttcatctc |
199 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
27225760 |
acccataa-tttttttaaaccttttcatcttttcagatgaagtttcagatcaaaaatcaataacccagaatttattaaatgtatttatctcttcatctc |
27225857 |
T |
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