View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15696_high_9 (Length: 455)
Name: NF15696_high_9
Description: NF15696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15696_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 348
Target Start/End: Complemental strand, 26206622 - 26206281
Alignment:
| Q |
14 |
aactaatcttattgttctactatatcaacacaaaaaagaaaagaacaagaagtagagacaattccaaggacggctagaggacgctttaggtgccagctaa |
113 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||| ||||||||| |
|
|
| T |
26206622 |
aactaatcttattgttctcatatatcaacacaaaaaagaaaagaacaagaagtggagacaattccaaggacggctagaagacgcttgaggggccagctaa |
26206523 |
T |
|
| Q |
114 |
gtcacaagg--------taaaaagctccaattccattggatacggttgtaaaattgccattaattattggcactttaattaatnnnnnnn---ctagaat |
202 |
Q |
| |
|
|||| ||| | | || |||||||||||||||| ||||||||||||| || |||| ||||||||||||||||| ||||||| |
|
|
| T |
26206522 |
gtcataagagcatagccttataacctccaattccattggaaacggttgtaaaatggctatta----ttggcactttaattaataaaaaaaaaactagaat |
26206427 |
T |
|
| Q |
203 |
gagacccgcgggatgcacggggttgcagatgacttgtttaagtatcgttagattagatataagttagacaataatattaggtgaagcaaaaatgagtagt |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26206426 |
gagacccgcgggatgcacggggttgcagatgacttgtttaagtatcgttagattagatataagttagacaataatatgaggtgaagcaaaaatgagtagt |
26206327 |
T |
|
| Q |
303 |
aaaatttaagtgaaaagaaatacatgtctaaatcatggaagtgcag |
348 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
26206326 |
aaaatttaagtgaaaagaaatacacgtctaaatcatgaaagtgcag |
26206281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 14 - 348
Target Start/End: Complemental strand, 26226252 - 26225903
Alignment:
| Q |
14 |
aactaatcttattgttctactatatcaacacaaaaaagaaaagaacaagaagtagagacaattccaaggacggctagaggacgctttaggtgccagctaa |
113 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||| ||||||||| |
|
|
| T |
26226252 |
aactaatcttattgttctaatatatcaacacaaaaaagaaaagaacaagaagtggagacaattccaaggacggctagaagacgcttgaggggccagctaa |
26226153 |
T |
|
| Q |
114 |
gtcacaagg--------taaaaagctccaattccattggatacggttgtaaaattgccattaattattggcactttaattaatnnnnnnn---------- |
195 |
Q |
| |
|
|||| ||| | | || ||||||||||| |||| ||||||||||||| | || ||||||||||||||||||||| |
|
|
| T |
26226152 |
gtcataagagcatagccttataacctccaattccagtggaaacggttgtaaaatgg--at--attattggcactttaattaataaaaaaaaaaaaaaaaa |
26226057 |
T |
|
| Q |
196 |
-ctagaatgagacccgcgggatgcacggggttgcagatgacttgtttaagtatcgttagattagatataagttagacaataatattaggtgaagcaaaaa |
294 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26226056 |
actagaatgagacccgcgggaggcacggggttgcagatgacttgtttaagtatcgttagattagatataagttagacaataatattaggtgaagcaaaaa |
26225957 |
T |
|
| Q |
295 |
tgagtagtaaaatttaagtgaaaagaaatacatgtctaaatcatggaagtgcag |
348 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||| ||| |||| |
|
|
| T |
26225956 |
tgagtagtaaaatttcagtgaaaagaaacacatgtctaaatcatgaaagagcag |
26225903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 437
Target Start/End: Complemental strand, 26225854 - 26225814
Alignment:
| Q |
397 |
ccagtcaagttatctacgtctttaacattttttacttggtt |
437 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
26225854 |
ccagtcaagtgatctatgtctttaacattttttacttggtt |
26225814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 446
Target Start/End: Complemental strand, 26206232 - 26206185
Alignment:
| Q |
397 |
ccagtcaagttatctacgtctttaacattttttacttggtttggcctttg |
446 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
26206232 |
ccagtcaagttatctatgtctg--acattttttacttggtttggcctttg |
26206185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University