View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15696_low_1 (Length: 790)
Name: NF15696_low_1
Description: NF15696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15696_low_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 561
Target Start/End: Original strand, 31029272 - 31029832
Alignment:
| Q |
1 |
ctaacagtattgatcagtaaggttgataacatatatggttttaaattgcggtttgcagcgagcaaggtcgattgtttaggggtgaattggactgggcgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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|
| T |
31029272 |
ctaacagtattgatcagtaaggttgataacatatatggttttaaattgcggtttgcagcgagcatggtcgattgtttaggggtgaattggactgggtgtt |
31029371 |
T |
|
| Q |
101 |
gatggctttgatggagtaccacgtggaaggaactgcaacaaaagtccatcaatttcctttgaaatttgttcatcttgcaaaggtctgcatgcaaatccat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
31029372 |
gatggctttgatggagtaccacgtggaaggaactgcaacaaaagtccatcaaattcctttgaaatttgttcatcttgcaaaggcctgcatgcagatccaa |
31029471 |
T |
|
| Q |
201 |
gttgacaagaaactaccagaatgaagaaaatgatgactagaaccgtaaaaaggatcctcttgttattataagaaaaagccatatatgtttaatttgtagt |
300 |
Q |
| |
|
||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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|
| T |
31029472 |
gttgagaagaaacaactagaatgaagaaaatgatgactagaaccgtaaaaaggatcctcttattattataagaaaaagccatataggtttaatttgtagt |
31029571 |
T |
|
| Q |
301 |
attaatgtaatgtaatttggatgaaataattaaataaattccttctagttttgtgccttattgatgatatccttattacaacaagtttctttgcttgagt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31029572 |
attaatgtaatgtaatttggatgaaataattaaaaaaattccttctagttttgtgccttattgatgatatccttattacaacaagtttctttgcttgaga |
31029671 |
T |
|
| Q |
401 |
tttgaagatgtgaatggtatgttttgaaacaagcaaac--nnnnnnnnnnnnnnnnnnngtggctccatgcatgaaaaacaggtttttgaaattcgttta |
498 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||| ||| |||||||||||||||||| |
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|
| T |
31029672 |
tttgaagatgtgaatggtatgttttggaacaagcaaacatatatatggatatatatatagtgactccatgcatgaagaacgagtttttgaaattcgttta |
31029771 |
T |
|
| Q |
499 |
gcttgactacttgtaatattcttatggtttgaacttgaatgttgacaattgaacgaatcaaac |
561 |
Q |
| |
|
||||||||| ||| | |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31029772 |
gcttgactaattgca--attcttatggtttgaacttgaaagttgacaattgaacgaatcaaac |
31029832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 561
Target Start/End: Original strand, 31036242 - 31036802
Alignment:
| Q |
1 |
ctaacagtattgatcagtaaggttgataacatatatggttttaaattgcggtttgcagcgagcaaggtcgattgtttaggggtgaattggactgggcgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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|
| T |
31036242 |
ctaacagtattgatcagtaaggttgataacatatatggttttaaattgcggtttgcagcgagcatggtcgattgtttaggggtgaattggactgggtgtt |
31036341 |
T |
|
| Q |
101 |
gatggctttgatggagtaccacgtggaaggaactgcaacaaaagtccatcaatttcctttgaaatttgttcatcttgcaaaggtctgcatgcaaatccat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
31036342 |
gatggctttgatggagtaccacgtggaaggaactgcaacaaaagtccatcaaattcctttgaaatttgttcatcttgcaaaggcctgcatgcagatccaa |
31036441 |
T |
|
| Q |
201 |
gttgacaagaaactaccagaatgaagaaaatgatgactagaaccgtaaaaaggatcctcttgttattataagaaaaagccatatatgtttaatttgtagt |
300 |
Q |
| |
|
||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31036442 |
gttgagaagaaacaactagaatgaagaaaatgatgactagaaccgtaaaaaggatcctcttattattataagaaaaagccatataggtttaatttgtagt |
31036541 |
T |
|
| Q |
301 |
attaatgtaatgtaatttggatgaaataattaaataaattccttctagttttgtgccttattgatgatatccttattacaacaagtttctttgcttgagt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31036542 |
attaatgtaatgtaatttggatgaaataattaaaaaaattccttctagttttgtgccttattgatgatatccttattacaacaagtttctttgcttgaga |
31036641 |
T |
|
| Q |
401 |
tttgaagatgtgaatggtatgttttgaaacaagcaaac--nnnnnnnnnnnnnnnnnnngtggctccatgcatgaaaaacaggtttttgaaattcgttta |
498 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
31036642 |
tttgaagatgtgaatggtatgttttggaacaagcaaacatatatatggatatatatatagtgactccatgcatgaagaacgagtttttgaaattcgttta |
31036741 |
T |
|
| Q |
499 |
gcttgactacttgtaatattcttatggtttgaacttgaatgttgacaattgaacgaatcaaac |
561 |
Q |
| |
|
||||||||| ||| | |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31036742 |
gcttgactaattgca--attcttatggtttgaacttgaaagttgacaattgaacgaatcaaac |
31036802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 561
Target Start/End: Original strand, 31026437 - 31026979
Alignment:
| Q |
1 |
ctaacagtattgatcagtaaggttgataacatatatggttttaaattgcggtttgcagcgagcaaggtcgattgtttaggggtgaattggactgggcgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
31026437 |
ctaacagtattgatcagtaaggttgataacatatatggttttaaattgcggtttgcagcgagcatggtcgattgtttaggggtgaattggactgggtgtt |
31026536 |
T |
|
| Q |
101 |
gatggctttgatggagtaccacgtggaaggaactgcaacaaaagtccatcaatttcctttgaaatttgttcatcttgcaaaggtctgcatgcaaatccat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
31026537 |
gatggctttgatggagtaccacgtggaaggaactgcaacaaaagtccatcaaattcctttgaaatttgttcatcttgcaaaggcctgcatgcagatccaa |
31026636 |
T |
|
| Q |
201 |
gttgacaagaaactaccagaatgaagaaaatgatgactagaaccgtaaaaaggatcctcttgttattataagaaaaagccatatatgtttaatttgtagt |
300 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31026637 |
gttgagaagaaacaaccagaatgaagaaaatgatgactagaaccgtaaaaaggatcctcttgttattataagaaaaagccatataggtttaatttgtagt |
31026736 |
T |
|
| Q |
301 |
attaatgtaatgtaatttggatgaaataattaaataaattccttctagttttgtgccttattgatgatatccttattacaacaagtttctttgcttgagt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31026737 |
attaatgtaatgtaatttggatgaaataattaaaaaaattccttctagttttgtgccttatt------------------acaagtttctttgcttgaga |
31026818 |
T |
|
| Q |
401 |
tttgaagatgtgaatggtatgttttgaaacaagcaaacnnnnnnnnnnnnnnnnnnngtggctccatgcatgaaaaacaggtttttgaaattcgtttagc |
500 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||| || ||||||||||||||||||| |
|
|
| T |
31026819 |
tttgaagatgtgaatggtatgttttggaacaagcaaacatatatatggatatatatagtgactccatgcatgaagtacgagtttttgaaattcgtttagt |
31026918 |
T |
|
| Q |
501 |
ttgactacttgtaatattcttatggtttgaacttgaatgttgacaattgaacgaatcaaac |
561 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31026919 |
ttgactaactgtaatattcttatggtttgaacttgaaagttgacaattgaacgaatcaaac |
31026979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 17 - 371
Target Start/End: Original strand, 31041455 - 31041809
Alignment:
| Q |
17 |
gtaaggttgataacatatatggttttaaattgcggtttgcagcgagcaaggtcgattgtttaggggtgaattggactgggcgttgatggctttgatggag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
31041455 |
gtaaggttgataacatatatggttttaaattgcggtttgcagcaagcatggtccattgtttaggggtgaattgtactgggtgttgatggctttgatggag |
31041554 |
T |
|
| Q |
117 |
taccacgtggaaggaactgcaacaaaagtccatcaatttcctttgaaatttgttcatcttgcaaaggtctgcatgcaaatccatgttgacaagaaactac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||| ||||||||||||||||||||| ||||||| || |
|
|
| T |
31041555 |
taccacgtggaaggaactgcaacaaaagtccatcaaattccttcgaattttgttcatcttgcaaaggcctgcatgcaaatccatgttgagaagaaacaac |
31041654 |
T |
|
| Q |
217 |
cagaatgaagaaaatgatgactagaaccgtaaaaaggatcctcttgttattataagaaaaagccatatatgtttaatttgtagtattaatgtaatgtaat |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31041655 |
cagaatgaagaaaatgatgactagaaccgtaaaaaggatcctcttgttattataagaaaaagccatataggtttaatttgtagtattaatgtaatgtaat |
31041754 |
T |
|
| Q |
317 |
ttggatgaaataattaaataaattccttctagttttgtgccttattgatgatatc |
371 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||||| ||||| |
|
|
| T |
31041755 |
ttggatgaaataattaaaaaatttccttctagttttgtgccttattgataatatc |
31041809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 665 - 786
Target Start/End: Original strand, 31036889 - 31037010
Alignment:
| Q |
665 |
accgttgattatccattttaatactccaaacaggcacggtgacaatttatttattttgcattcatttagtcctgtgtctcaaaatcggctaaatggagac |
764 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31036889 |
accgtggattatccattttaatactccaaacaggcacggtgacaatttatttattttgcattcatttagtcctgtgtctcaaaatcggctaaatggagac |
31036988 |
T |
|
| Q |
765 |
ccattctatttaccggagtatt |
786 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
31036989 |
ccattctatttaccggagtatt |
31037010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 118 - 283
Target Start/End: Original strand, 31017898 - 31018067
Alignment:
| Q |
118 |
accacgtggaaggaactgcaacaaaagtccatcaatttcctttgaaattt---gttcatcttgcaaag-gtctgcatgcaaatccatgttgacaagaaac |
213 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||| |||||||| |||||||||| ||| ||||| || || |||| ||||| |||||| |
|
|
| T |
31017898 |
accacgtggaaggaactgcaacaaaagcccatcaaattctcttgaaattcttcgttcatcttgtaaattgtctgtatccagctccaagttgagaagaaat |
31017997 |
T |
|
| Q |
214 |
taccagaatgaagaaaatgatgactagaaccgtaaaaaggatcctcttgttattataagaaaaagccata |
283 |
Q |
| |
|
||||||| |||||||||||| |||||| || |||||||| ||| ||||||||||||| ||||||||| |
|
|
| T |
31017998 |
gaccagaacgaagaaaatgatcgctagaaatgtgaaaaggatactcatgttattataagagaaagccata |
31018067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 483 - 561
Target Start/End: Original strand, 31041908 - 31041987
Alignment:
| Q |
483 |
ttttgaaattcgtttagcttgactacttgtaatattcttatggtttgaacttg--aatgttgacaattgaacgaatcaaac |
561 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||| ||||||||||||||||||| || |||||| |||||||||||||||| |
|
|
| T |
31041908 |
ttttgaaattcgttgagcttgactaattgtaat-ttcttatggtttgaacttgaaaaagttgacgattgaacgaatcaaac |
31041987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 708 - 770
Target Start/End: Original strand, 31033900 - 31033961
Alignment:
| Q |
708 |
aatttatttattttg-cattcatttagtcctgtgtctcaaaatcggctaaatggagacccattc |
770 |
Q |
| |
|
||||||||||||||| ||||||||||| | |||||||||||| || ||||||||||||||||| |
|
|
| T |
31033900 |
aatttatttattttgacattcatttagcc--gtgtctcaaaattggataaatggagacccattc |
31033961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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