View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15696_low_12 (Length: 404)
Name: NF15696_low_12
Description: NF15696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15696_low_12 |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 29636537 - 29636226
Alignment:
| Q |
1 |
aacattctttcacattttcacctaatgctactactcctttcttaccatccatccccattagagtaaaacaatgtcacacagaagctcactcactattata |
100 |
Q |
| |
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|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29636537 |
aacattctttcacattttcatctagtgctactactcctttcttaccatccatccccattagagtaaaacaatgtcacacagaagctcactcactattata |
29636438 |
T |
|
| Q |
101 |
atgtaacatgataaattagaagccttgataaattagtaggattcaaacaaagaagaataacatgattcaaacaaattagtaggattcatattagtttctt |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29636437 |
atgaaacatgataaattagaagccttgataaattagtaggattcaaacaaattagaataacatgattcaaacaaattagtaggtttcatattagtttctt |
29636338 |
T |
|
| Q |
201 |
ggttcaaaaatcaaaacagaagctcattcaccatgattcaaacaaagtaacatggaaatgaaacacacaagttgaacaaatagaataacatgataaatta |
300 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29636337 |
tgttcaaaaatcaaaacagaagttcattcaccatgattcaaacaaagtaacatggaaatgaaacacacaagttgaacaaatagaataacatgataaatta |
29636238 |
T |
|
| Q |
301 |
gtaggattcata |
312 |
Q |
| |
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|||||||||||| |
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| T |
29636237 |
gtaggattcata |
29636226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 46198 - 45887
Alignment:
| Q |
1 |
aacattctttcacattttcacctaatgctactactcctttcttaccatccatccccattagagtaaaacaatgtcacacagaagctcactcactattata |
100 |
Q |
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|||||| ||||||||||||| ||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46198 |
aacattatttcacattttcatctagtgctactactcctttcttacaatccatccctattagagtaaaacaatgtcacacagaagctcactcactattata |
46099 |
T |
|
| Q |
101 |
atgtaacatgataaattagaagccttgataaattagtaggattcaaacaaagaagaataacatgattcaaacaaattagtaggattcatattagtttctt |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
46098 |
atgaaacatgataaattagaagccttgataaattagtaggattcaaacaaagcagaataacatgattcaaacaaattagcaggattcatattagtttctt |
45999 |
T |
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| Q |
201 |
ggttcaaaaatcaaaacagaagctcattcaccatgattcaaacaaagtaacatggaaatgaaacacacaagttgaacaaatagaataacatgataaatta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45998 |
ggttcaaaaatcaaaacagaagctcattcaccatgattcaatcaaagtaacatggaaatgaaacacacaagttgaacaaatagaataacatgataaatta |
45899 |
T |
|
| Q |
301 |
gtaggattcata |
312 |
Q |
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|
|||||||||||| |
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| T |
45898 |
gtaggattcata |
45887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 26 - 312
Target Start/End: Original strand, 33053148 - 33053434
Alignment:
| Q |
26 |
tgctactactcctttcttaccatccatccccattagagtaaaacaatgtcacacagaagctcactcactattataatgtaacatgataaattagaagcct |
125 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33053148 |
tgctactactcctttcttaccatccatccccattagagtaaaacaatgtcacacagaagctcactcactattataatgaaacatgataaattagaagcct |
33053247 |
T |
|
| Q |
126 |
tgataaattagtaggattcaaacaaagaagaataacatgattcaaacaaattagtaggattcatattagtttcttggttcaaaaatcaaaacagaagctc |
225 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33053248 |
tgataaattaataggattcaaacaaagtagaataacatgattcaaacaaattagtaggattcatattagtttcttggttcaaaaatcaaaacagaagctc |
33053347 |
T |
|
| Q |
226 |
attcaccatgattcaaacaaagtaacatggaaatgaaacacacaagttgaacaaatagaataacatgataaattagtaggattcata |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33053348 |
attcaccatgattcaaacaaagtaacatggaaatgaaacacacaagttgaacaaatagaataacatgataaattagtaggattcata |
33053434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 33053035 - 33053112
Alignment:
| Q |
1 |
aacattctttcacattttcacctaatgctactactcctttcttaccatccatccccattagagtaaaacaatgtcaca |
78 |
Q |
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|||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33053035 |
aacattctttcacattttcatctagtgctactactcctttcttaccatccatcctcattagagtaaaacaatgtcaca |
33053112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 41501047 - 41501341
Alignment:
| Q |
1 |
aacattctttcacattttcacctaatgctactactcctttcttaccatccatccccattagagtaaaacaatgtcacacagaagctcactcactattata |
100 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41501047 |
aacattctttcacattttcatctagtgctaccactcctttcttaccatccatccccattagagtaaaacaatgtcacacagaagctcactcactattata |
41501146 |
T |
|
| Q |
101 |
atgtaacatgataaattagaagccttgataaattagtaggattcaaacaaagaagaataacatgattcaaacaaattagtaggattcatattagtttctt |
200 |
Q |
| |
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||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41501147 |
atgaaacatgat-----------------aaattagtaggattcaaacaaagtagaataacatgattcaaacaaattagtaggattcatattagtttctt |
41501229 |
T |
|
| Q |
201 |
ggttcaaaaatcaaaacagaagctcattcaccatgattcaaacaaagtaacatggaaatgaaacacacaagttgaacaaatagaataacatgataaatta |
300 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41501230 |
ggtttaaaaatcaaaacagaagctcattcaccatgattcaaacaaagcaacatggaaatgaaacacacaagttgaacaaatagaataacatgataaatta |
41501329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 39051649 - 39051711
Alignment:
| Q |
12 |
acattttcacctaatgctactactcctttcttaccatccatccccattagagtaaaacaatgt |
74 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
39051649 |
acattttcacctagtgctactactcctttcttactatccatccccattagagtaaaaaaatgt |
39051711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 3694476 - 3694538
Alignment:
| Q |
12 |
acattttcacctaatgctactactcctttcttaccatccatccccattagagtaaaacaatgt |
74 |
Q |
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||||||||||||| |||||||||| ||||||||| || ||||||||||||||||||||||||| |
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| T |
3694476 |
acattttcacctagtgctactacttctttcttactatacatccccattagagtaaaacaatgt |
3694538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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