View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15696_low_17 (Length: 351)
Name: NF15696_low_17
Description: NF15696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15696_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 338
Target Start/End: Original strand, 41306653 - 41306969
Alignment:
| Q |
17 |
agctccttcattagaattaattaatgtttccttggcttaatttaattagaaccatacaaattaaatgacattccttagtttcttaaaccttagttcattg |
116 |
Q |
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| T |
41306653 |
agctccttcattagaattaattaatgtttccttggcttaatttcattagaaccatacaaat-----gacattccttagtttcttaaaccttacttcattg |
41306747 |
T |
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| Q |
117 |
gtgttcttgcaggcaatgctgcttcagtctcactttatgcggcgccaatgtaagttacataacataatcaattcatcatctaccactcttaattggagaa |
216 |
Q |
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| T |
41306748 |
gtgttcttgcaggcaatgctgcttcagtctcactttatgcggcgccaatgtaagttacataacataattaattcatcatctaccactcttaattggagaa |
41306847 |
T |
|
| Q |
217 |
aatgaagtattgaagtctttcatggttaattttcagggttacatttaaaagagtaataaggaagaaaagcacagaggaattttcatgcattccttacata |
316 |
Q |
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| T |
41306848 |
aatgaagtattgaagtctttcatggttaattttcagggttacatttaaaagagtaataaggaagaaaagcaccgaggaattttcatgcattccttacata |
41306947 |
T |
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| Q |
317 |
attggattgttgaattgtcttc |
338 |
Q |
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|||||||||||||||||||||| |
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| T |
41306948 |
attggattgttgaattgtcttc |
41306969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 117 - 338
Target Start/End: Original strand, 41296882 - 41297107
Alignment:
| Q |
117 |
gtgttcttgcaggcaatgctgcttcagtctcactttatgcggcgccaatgtaagttacataacataatcaattcatcatctaccactcttaattggagaa |
216 |
Q |
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| T |
41296882 |
gtgttcttacaggcaatgctgcctcagtctcactttatgctgcgccaatgtgagtaacatatcataatcaattcattag-taccactcattatctaccaa |
41296980 |
T |
|
| Q |
217 |
aatgaagtattgaagtctt-----tcatggttaattttcagggttacatttaaaagagtaataaggaagaaaagcacagaggaattttcatgcattcctt |
311 |
Q |
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| T |
41296981 |
aatgaagtgttgaatccttaattttgatgcttaattttcagggttacatttaaaagagtaataaggaagaaaagcacagaggaattttcatgcattcctt |
41297080 |
T |
|
| Q |
312 |
acataattggattgttgaattgtcttc |
338 |
Q |
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| T |
41297081 |
acataattggattgttgaattgtcttc |
41297107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 9612413 - 9612352
Alignment:
| Q |
120 |
ttcttgcaggcaatgctgcttcagtctcactttatgcggcgccaatgtaagttacataacat |
181 |
Q |
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| T |
9612413 |
ttcttgcaggaaatgttgcatcagtgtcactttatgctgcaccaatgtatgttacataacat |
9612352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 314
Target Start/End: Complemental strand, 9612269 - 9612209
Alignment:
| Q |
254 |
gttacatttaaaagagtaataaggaagaaaagcacagaggaattttcatgcattccttaca |
314 |
Q |
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||||| || ||||| || |||||||| |||||||| |||||||||||||| |||||||||| |
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| T |
9612269 |
gttactttcaaaagggtgataaggaaaaaaagcactgaggaattttcatgtattccttaca |
9612209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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