View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15696_low_2 (Length: 784)
Name: NF15696_low_2
Description: NF15696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15696_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-178; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 15 - 375
Target Start/End: Original strand, 36329645 - 36330006
Alignment:
| Q |
15 |
cacagacaacatcaatnnnnnnngaatgctttgcaaacagaaatataacaatgtggttagtgcttattttatccttaaactccaaaagacacttgaaatt |
114 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36329645 |
cacagacaacatcaataaaaaaagaatgctttgcaaacagaaatataacaatgtggttagtgcttattttattcttaaactccaaaagacacttgaaatt |
36329744 |
T |
|
| Q |
115 |
tgaatacaggctaaaa-tctcaaaatacatttgaacttaaatttttcatattatgctagtcaagagggttatggcttgtctactacgtcatctcataatg |
213 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36329745 |
tgaatacaggctaaaaatctcaaaatacatttgaacttaaatttttcatattatgctagtcaagagggttatggcttgtctactacgtcatctcataatg |
36329844 |
T |
|
| Q |
214 |
tatcaagaatatatacatcacttttggcagtagtaattgaatgtgtgtgaaattaaagtccatattttattcatccatgctgctaaaattttgaacataa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36329845 |
tatcaagaatatatacatcacttttggcagtagtaattgaatgtgtgtgaaattaaagtccacattttattcatccatgctgctaaaattttcaacataa |
36329944 |
T |
|
| Q |
314 |
tttgataaaagggtaaaagagttaagaacgctgagaaatagagggagaagcaaacgaaatat |
375 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36329945 |
tttgataaaagggtaaaagacttaagaacgctgagaaatagagggagaagcaaacgaaatat |
36330006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 440 - 765
Target Start/End: Original strand, 36330073 - 36330398
Alignment:
| Q |
440 |
cattttagattcaaatcttcttactaataatacatggtcatcaacttaacaaacaaattaaagtttgacttgtaaaatttaaaagcacccaagtatgtta |
539 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36330073 |
cattttagattcaaatcttcttactaataatacatggtcatcaacttaacatacaaattaaagtttgacttgtaaaatttaaaagcacccaagtatgtta |
36330172 |
T |
|
| Q |
540 |
aaccctaatgagttaacttcataaatcaatgttgtcaaactcaattgtaaacaagatcattaccttgttaagtctagaaccatcatttctatgaggttcc |
639 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
36330173 |
aaccctaatgagttaacttcacaaatcaatgttgtcaaactcaattgtaaacaacatcattaccttgttaagtctagaaccatcatctctatgagcttcc |
36330272 |
T |
|
| Q |
640 |
agtactagtgcagctacttctctctcaaatttagatcttggtctaaattcagaagctatagctcctatagttgaaaaccctatatctactttttcataaa |
739 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36330273 |
agtactagtgcagctacttctctctcaaatttagatcttggtctaaattcagaagctatagctcctatagttgaaaaccctatatctactttttcataaa |
36330372 |
T |
|
| Q |
740 |
aggatatagtcgttgcatctctgttt |
765 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
36330373 |
aggatatagtcgttgcatctctgttt |
36330398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 643 - 726
Target Start/End: Original strand, 44369379 - 44369462
Alignment:
| Q |
643 |
actagtgcagctacttctctctcaaatttagatcttggtctaaattcagaagctatagctcctatagttgaaaaccctatatct |
726 |
Q |
| |
|
||||||||||| | || |||||||||| || ||| ||| ||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
44369379 |
actagtgcagccattttcctctcaaattcagttctgggttcaaattcagaagctattgctcctatagttgaaaaccctagatct |
44369462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 683 - 741
Target Start/End: Original strand, 52929484 - 52929542
Alignment:
| Q |
683 |
taaattcagaagctatagctcctatagttgaaaaccctatatctactttttcataaaag |
741 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| |
|
|
| T |
52929484 |
taaattcagaagctatagctcctatagttgaaaaccctagatctatcttttcatcaaag |
52929542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 643 - 726
Target Start/End: Complemental strand, 20238098 - 20238015
Alignment:
| Q |
643 |
actagtgcagctacttctctctcaaatttagatcttggtctaaattcagaagctatagctcctatagttgaaaaccctatatct |
726 |
Q |
| |
|
||||||||||| | || |||||||||| || ||| ||| ||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
20238098 |
actagtgcagccattttcctctcaaattcagttctgggttcaaattcagaagctattgctcctatagttgaaaaccctagatct |
20238015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University