View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15696_low_21 (Length: 313)
Name: NF15696_low_21
Description: NF15696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15696_low_21 |
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| [»] scaffold0662 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 9538139 - 9538425
Alignment:
| Q |
11 |
caaaggataatcagatgcactaagattaataaaccaatcccatttacaactcctaagaagaattgccatagcatgaagagttgtagaaagcatagttgga |
110 |
Q |
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| T |
9538139 |
caaaggataatcagaagcactaagattaataaaccaatcccatttacaactcctaagaagaattgccatagcatgaagagttgtagaaagcatagttgga |
9538238 |
T |
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| Q |
111 |
cctttatatgtaacaaaattactcttctttataatccaaacatttcctacttgaccaaaaacaggttcattagtcacataatcaatcacatctctatgat |
210 |
Q |
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| T |
9538239 |
cctttatatgtaacaaaattactcttctttataatccaaacatttcccacttgaccaaaaacaggttcattactcacataatcaatcacatctctatgat |
9538338 |
T |
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| Q |
211 |
ctttctttggagcaccatgatccatatgaatcaaataataattccctggatggtacaaagcctttaacaaccttttgattttgatag |
297 |
Q |
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| T |
9538339 |
ctttctttggtgcaccatgatccatatgaatcaaataataattccctggatggtacaaagcctttaacaaccttttgattttgatag |
9538425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 3034217 - 3034254
Alignment:
| Q |
15 |
ggataatcagatgcactaagattaataaaccaatccca |
52 |
Q |
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| T |
3034217 |
ggataatcagaagcactaagattgataaaccaatccca |
3034254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 15 - 241
Target Start/End: Complemental strand, 33717812 - 33717586
Alignment:
| Q |
15 |
ggataatcagatgcactaagattaataaaccaatcccatttacaactcctaagaagaattgccatagcatgaagagttgtagaaagcatagttggacctt |
114 |
Q |
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| T |
33717812 |
ggataatcagaagcactaagattaataaaccaatcccaatgacatgtcttaagaagcattgccatagcatgaagagtagttgcaagcatagttggtcctc |
33717713 |
T |
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| Q |
115 |
tatatgtaacaaaattactcttctttataatccaaacatttcctacttgaccaaaaacaggttcattagtcacataatcaatcacatctctatgatcttt |
214 |
Q |
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|||| || || |||||| |||| | |||||||||||| || ||||||| ||||||||| ||||||| |||||| || ||||||| |||| ||| |
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| T |
33717712 |
tataagttaccaaattaggcttcccaacaatccaaacattcccaacttgactaaaaacaggatcattagccacatattctgccacatctttatgttctgc |
33717613 |
T |
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| Q |
215 |
ctttggagcaccatgatccatatgaat |
241 |
Q |
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| T |
33717612 |
atctggagcaccataatccatgtgaat |
33717586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0662 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0662
Description:
Target: scaffold0662; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 4786 - 4742
Alignment:
| Q |
8 |
aagcaaaggataatcagatgcactaagattaataaaccaatccca |
52 |
Q |
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| T |
4786 |
aagcaagggataatcagaagcactaagattaataaaccaatccca |
4742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 47025907 - 47025863
Alignment:
| Q |
8 |
aagcaaaggataatcagatgcactaagattaataaaccaatccca |
52 |
Q |
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| T |
47025907 |
aagcaagggataatcagaagcactaagattaataaaccaatccca |
47025863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 33230991 - 33230953
Alignment:
| Q |
14 |
aggataatcagatgcactaagattaataaaccaatccca |
52 |
Q |
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| T |
33230991 |
aggataatcagaagcactaagattaataaaccaatccca |
33230953 |
T |
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