View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15696_low_24 (Length: 274)

Name: NF15696_low_24
Description: NF15696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15696_low_24
NF15696_low_24
[»] chr5 (2 HSPs)
chr5 (1-256)||(1985259-1985516)
chr5 (125-192)||(23151234-23151301)
[»] chr3 (2 HSPs)
chr3 (14-191)||(40851919-40852098)
chr3 (202-247)||(40851644-40851690)
[»] chr2 (1 HSPs)
chr2 (41-191)||(44657258-44657408)
[»] chr1 (3 HSPs)
chr1 (124-160)||(27466774-27466810)
chr1 (128-192)||(6352477-6352541)
chr1 (94-182)||(48097277-48097365)
[»] scaffold0996 (1 HSPs)
scaffold0996 (137-192)||(1597-1652)
[»] scaffold0067 (1 HSPs)
scaffold0067 (125-192)||(11033-11100)
[»] chr7 (2 HSPs)
chr7 (125-192)||(41147719-41147786)
chr7 (124-192)||(513816-513884)
[»] chr4 (1 HSPs)
chr4 (125-192)||(32499511-32499578)
[»] scaffold0007 (1 HSPs)
scaffold0007 (126-160)||(188461-188495)


Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 1985516 - 1985259
Alignment:
Q  1 gaagctatcaaagtggccatatca--cgtaatgcccactcttttgtttgaaacggattgcaaatctctatcatatgctatttgtttcacaaaggttcctc 98  Q
    ||||||||||||||||||||||||  |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1985516 gaagctatcaaagtggccatatcaaacgtaatgcccactgctttgtttgaaacggattgcaaatctctatcatatgctatttgttccacaaaggttcctc 1985417  T
Q  99 taaatgaatttggagacattgtccttcaatgtagaagtctcttacttaatagacccgactttttaatgccgcatgttcggaggcaagctaatagctcatt 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1985416 taaatgaatttggagacattgtccttcaatgtagaagtctcttacttaatagacccgactttttagtgccgcatgttcggaggcaagctaatagctcatt 1985317  T
Q  199 gcacagccagagcatccttatctcatcctagccccatattttcaattatgtgccaact 256  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1985316 gcacagccagagcatccttatctcatcctaaccccatattttcaattatgtgccaact 1985259  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 23151234 - 23151301
Alignment:
Q  125 caatgtagaagtctcttacttaatagacccgactttttaatgccgcatgttcggaggcaagctaatag 192  Q
    ||||||||||||||||||||| ||| ||||||||||  | || || ||||| |||||||||| |||||    
T  23151234 caatgtagaagtctcttacttgataaacccgactttgcagtgtcgtatgttaggaggcaagcaaatag 23151301  T

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Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 14 - 191
Target Start/End: Complemental strand, 40852098 - 40851919
Alignment:
Q  14 tggccatatca--cgtaatgcccactcttttgtttgaaacggattgcaaatctctatcatatgctatttgtttcacaaaggttcctctaaatgaatttgg 111  Q
    |||||||||||  || ||||| |||| ||||||||||||| ||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||    
T  40852098 tggccatatcaaacggaatgcacactattttgtttgaaacagattgcaaatctctaccagatgctatttgttccacaaaggttcctctaaatgaatttgg 40851999  T
Q  112 agacattgtccttcaatgtagaagtctcttacttaatagacccgactttttaatgccgcatgttcggaggcaagctaata 191  Q
    |||| ||||| |||||||||||||||||||| |||||||||| |||| | || || | |||||||| |||||| ||||||    
T  40851998 agaccttgtctttcaatgtagaagtctcttatttaatagacctgactatgtagtgtctcatgttcgtaggcaaactaata 40851919  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 40851690 - 40851644
Alignment:
Q  202 cagccagagcatccttatctcatcctag-ccccatattttcaattat 247  Q
    ||||||||||||| |||||||||||||| |||||| |||||||||||    
T  40851690 cagccagagcatctttatctcatcctagtccccatgttttcaattat 40851644  T

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Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 41 - 191
Target Start/End: Original strand, 44657258 - 44657408
Alignment:
Q  41 ttgtttgaaacggattgcaaatctctatcatatgctatttgtttcacaaaggttcctctaaatgaatttggagacattgtccttcaatgtagaagtctct 140  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||| ||| ||||||||||||||||||  | ||| ||||||||| ||||||||    
T  44657258 ttgtttgaaacggattgcaaatctctatcagatgctatttgttccacaaagattcttctaaatgaatttggagatctcgtctttcaatgtaaaagtctct 44657357  T
Q  141 tacttaatagacccgactttttaatgccgcatgttcggaggcaagctaata 191  Q
    ||||||||||| |||||||| || |  |||||||| ||||| || ||||||    
T  44657358 tacttaatagatccgactttgtagtatcgcatgtttggaggtaaactaata 44657408  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 27466774 - 27466810
Alignment:
Q  124 tcaatgtagaagtctcttacttaatagacccgacttt 160  Q
    |||||||||||||||||||||||||| ||||||||||    
T  27466774 tcaatgtagaagtctcttacttaataaacccgacttt 27466810  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 6352541 - 6352477
Alignment:
Q  128 tgtagaagtctcttacttaatagacccgactttttaatgccgcatgttcggaggcaagctaatag 192  Q
    |||||||||||||||||||  || ||||| ||| || || ||||| ||||||||||||| |||||    
T  6352541 tgtagaagtctcttacttaccagtcccgattttgtagtgtcgcatattcggaggcaagcaaatag 6352477  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 182
Target Start/End: Complemental strand, 48097365 - 48097277
Alignment:
Q  94 tcctctaaatgaatttggagacattgtccttcaatgtagaagtctcttacttaatagacccgactttttaatgccgcatgttcggaggc 182  Q
    |||||||||||||||||| ||  || |  | ||||||| || ||||||||| |||||||| |||||| || ||  ||||||||||||||    
T  48097365 tcctctaaatgaatttggtgatcttattttacaatgtaaaaatctcttactaaatagaccagactttgtagtgttgcatgttcggaggc 48097277  T

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Target: scaffold0996 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 1652 - 1597
Alignment:
Q  137 ctcttacttaatagacccgactttttaatgccgcatgttcggaggcaagctaatag 192  Q
    ||||| || ||||||||||||||| || || || ||||||||||||||||||||||    
T  1652 ctcttgctcaatagacccgactttgtagtgtcgtatgttcggaggcaagctaatag 1597  T

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Target: scaffold0067 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 11100 - 11033
Alignment:
Q  125 caatgtagaagtctcttacttaatagacccgactttttaatgccgcatgttcggaggcaagctaatag 192  Q
    ||||||||||||||||||||| ||| ||||||||||  | || || ||||| |||||||||| |||||    
T  11100 caatgtagaagtctcttacttgataaacccgactttgcagtgtcgtatgttaggaggcaagcaaatag 11033  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 41147719 - 41147786
Alignment:
Q  125 caatgtagaagtctcttacttaatagacccgactttttaatgccgcatgttcggaggcaagctaatag 192  Q
    ||||||||||||||||||||| ||| ||||||||||  | || || ||||| |||||||||| |||||    
T  41147719 caatgtagaagtctcttacttgataaacccgactttgcagtgtcgtatgttaggaggcaagcaaatag 41147786  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 192
Target Start/End: Original strand, 513816 - 513884
Alignment:
Q  124 tcaatgtagaagtctcttacttaatagacccgactttttaatgccgcatgttcggaggcaagctaatag 192  Q
    ||||||||  || ||||| || ||||||||||||||| || || || ||||| ||||||||||||||||    
T  513816 tcaatgtaagagcctcttgctcaatagacccgactttgtagtgtcgtatgtttggaggcaagctaatag 513884  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 32499511 - 32499578
Alignment:
Q  125 caatgtagaagtctcttacttaatagacccgactttttaatgccgcatgttcggaggcaagctaatag 192  Q
    ||||||||||||||||||||| ||| ||||||||||  | || || ||||| |||||||||| |||||    
T  32499511 caatgtagaagtctcttacttgataaacccgactttgcagtgtcgtatgttaggaggcaagcaaatag 32499578  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 160
Target Start/End: Complemental strand, 188495 - 188461
Alignment:
Q  126 aatgtagaagtctcttacttaatagacccgacttt 160  Q
    ||||||||||||||||||||| |||||||||||||    
T  188495 aatgtagaagtctcttacttattagacccgacttt 188461  T

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