View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15696_low_26 (Length: 268)
Name: NF15696_low_26
Description: NF15696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15696_low_26 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 49438409 - 49438135
Alignment:
| Q |
1 |
acttcataatgtggagaaactgcacatagaactaaataaggtttgaaatttattattgctatatgaatacactgatggtgaaatgtgttgannnnnnnnn |
100 |
Q |
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| T |
49438409 |
acttcataatgtggagaaactgcacatagaactaaataaggtttgaaatttattattgctatatgaatacactgatggtgaaatgtgttgattttgtttt |
49438310 |
T |
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| Q |
101 |
nnnnnnnnnnnngaaaatgttgaccttatttctgatg-------gtatatatttctatgttgtttacttgtttttagatgtatcgaagttttgatgagat |
193 |
Q |
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| T |
49438309 |
tgcttttcttttgaaaatgttgaccttatttctgatgagtgatggtatatatttctatgttgtttacttgtttttagatgtatcgaagttttgatgagat |
49438210 |
T |
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| Q |
194 |
tcctacctttcataatctgaccaagttgaaacttcacactataaactctaattggaatttgtaggtgcaagtgct |
268 |
Q |
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| T |
49438209 |
tcctacctttcataatctgaccaagttgaaacttcactctatcaactctaattggaatttgttggtgcaagtgct |
49438135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 49415413 - 49415481
Alignment:
| Q |
1 |
acttcataatgtggagaaactgcacatagaactaaataaggtttgaaatttattattgctatatgaata |
69 |
Q |
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| T |
49415413 |
acttcataatgtgaaggaactgtacatagaaataaatcaggtttgaaatttattattgctatatgaata |
49415481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 214
Target Start/End: Complemental strand, 49426928 - 49426836
Alignment:
| Q |
120 |
ttgaccttatttctgatggtatatatttctatgttgtttacttgtttttagatgtatcgaagttttgatgagattcctacctttcataatctgac |
214 |
Q |
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| T |
49426928 |
ttgaccttatttttcatggtatacctttccatgttgtttatttgttt--aggtgtatcgaggttgtgatgagattcctacctttcacaatttgac |
49426836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 268
Target Start/End: Original strand, 49415715 - 49415783
Alignment:
| Q |
200 |
ctttcataatctgaccaagttgaaacttcacactataaactctaattggaatttgtaggtgcaagtgct |
268 |
Q |
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| T |
49415715 |
ctttcataatttgaccaacttgggactttactctataaactctaattggcatttgttggcacaagtgct |
49415783 |
T |
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