View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15696_low_28 (Length: 264)

Name: NF15696_low_28
Description: NF15696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15696_low_28
NF15696_low_28
[»] scaffold0024 (2 HSPs)
scaffold0024 (70-241)||(43048-43218)
scaffold0024 (70-242)||(33744-33916)
[»] chr1 (13 HSPs)
chr1 (1-71)||(50949343-50949413)
chr1 (12-71)||(44911226-44911285)
chr1 (1-37)||(21687227-21687263)
chr1 (1-37)||(44223937-44223973)
chr1 (1-37)||(50429897-50429933)
chr1 (1-36)||(9347369-9347404)
chr1 (1-39)||(32162865-32162903)
chr1 (3-37)||(46824095-46824129)
chr1 (4-37)||(20480383-20480416)
chr1 (1-37)||(6703651-6703687)
chr1 (1-29)||(27172312-27172340)
chr1 (1-37)||(27172373-27172409)
chr1 (1-29)||(28633981-28634009)
[»] chr7 (13 HSPs)
chr7 (70-242)||(3340207-3340378)
chr7 (6-71)||(29293130-29293195)
chr7 (1-37)||(37972213-37972249)
chr7 (1-37)||(9035069-9035105)
chr7 (1-37)||(20419141-20419177)
chr7 (1-37)||(22740409-22740445)
chr7 (1-37)||(37889076-37889112)
chr7 (2-37)||(13741760-13741795)
chr7 (1-36)||(36527584-36527619)
chr7 (3-35)||(3204909-3204941)
chr7 (1-37)||(13741820-13741856)
chr7 (1-29)||(18864167-18864195)
chr7 (1-29)||(37972153-37972181)
[»] chr3 (10 HSPs)
chr3 (4-71)||(47666115-47666182)
chr3 (1-37)||(40848779-40848815)
chr3 (1-37)||(24485274-24485310)
chr3 (1-37)||(26007381-26007417)
chr3 (1-37)||(36180755-36180791)
chr3 (1-37)||(53766411-53766447)
chr3 (4-37)||(27238668-27238701)
chr3 (4-37)||(48160150-48160183)
chr3 (1-29)||(3353375-3353403)
chr3 (1-37)||(40848718-40848754)
[»] chr6 (6 HSPs)
chr6 (6-71)||(2354614-2354679)
chr6 (70-127)||(2935812-2935865)
chr6 (70-114)||(2986941-2986985)
chr6 (1-37)||(22684124-22684160)
chr6 (1-37)||(22754908-22754944)
chr6 (1-37)||(32733812-32733848)
[»] chr4 (17 HSPs)
chr4 (2-71)||(26207567-26207636)
chr4 (1-37)||(169255-169291)
chr4 (1-37)||(292983-293019)
chr4 (1-37)||(9023445-9023481)
chr4 (1-37)||(12757968-12758004)
chr4 (1-37)||(28196549-28196585)
chr4 (1-37)||(32703426-32703462)
chr4 (1-37)||(39912305-39912341)
chr4 (1-36)||(39086398-39086433)
chr4 (3-37)||(48406202-48406236)
chr4 (1-29)||(293051-293079)
chr4 (1-37)||(9023506-9023542)
chr4 (1-29)||(9380576-9380604)
chr4 (1-37)||(12758029-12758065)
chr4 (1-29)||(25162070-25162098)
chr4 (1-37)||(25162130-25162166)
chr4 (1-37)||(39912244-39912280)
[»] chr2 (8 HSPs)
chr2 (6-71)||(41790696-41790761)
chr2 (1-37)||(17851221-17851257)
chr2 (3-37)||(26692636-26692670)
chr2 (1-37)||(7979770-7979806)
chr2 (1-37)||(16911030-16911066)
chr2 (1-37)||(17851170-17851206)
chr2 (1-37)||(6325170-6325206)
chr2 (1-37)||(8851348-8851384)
[»] scaffold0069 (2 HSPs)
scaffold0069 (1-37)||(50272-50308)
scaffold0069 (1-29)||(50340-50368)
[»] chr8 (7 HSPs)
chr8 (3-37)||(25438903-25438937)
chr8 (1-37)||(6198910-6198946)
chr8 (1-37)||(24473584-24473620)
chr8 (1-37)||(37396971-37397007)
chr8 (1-29)||(33726868-33726896)
chr8 (1-29)||(34498313-34498341)
chr8 (1-29)||(41662790-41662818)
[»] scaffold0460 (1 HSPs)
scaffold0460 (1-37)||(531-567)
[»] chr5 (14 HSPs)
chr5 (1-37)||(10098767-10098803)
chr5 (1-37)||(21207479-21207515)
chr5 (1-37)||(43463959-43463995)
chr5 (1-36)||(41071991-41072026)
chr5 (3-37)||(3888479-3888513)
chr5 (3-37)||(19514729-19514763)
chr5 (1-37)||(10098706-10098742)
chr5 (1-37)||(19514788-19514824)
chr5 (1-29)||(22729265-22729293)
chr5 (1-37)||(25940717-25940753)
chr5 (1-37)||(25940781-25940817)
chr5 (1-37)||(26570983-26571019)
chr5 (1-37)||(37610393-37610429)
chr5 (1-29)||(43464027-43464055)
[»] scaffold0176 (1 HSPs)
scaffold0176 (3-37)||(19859-19893)
[»] scaffold0041 (1 HSPs)
scaffold0041 (3-37)||(38513-38547)
[»] scaffold0029 (1 HSPs)
scaffold0029 (1-29)||(10175-10203)
[»] scaffold0017 (2 HSPs)
scaffold0017 (1-37)||(185031-185067)
scaffold0017 (1-29)||(185100-185128)


Alignment Details
Target: scaffold0024 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 70 - 241
Target Start/End: Complemental strand, 43218 - 43048
Alignment:
Q  70 aaatggtaaattgattactaggtcacatcaataaaatgttgaaggctgaagcgtttttctttggatgcaaaagctattgatattagctccaaacttaaat 169  Q
    ||||||| ||||||| |  |||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||   ||||||||||||| |||||||    
T  43218 aaatggtgaattgatcaacaggtcacatcaataaaatgttgaaggctgaagcgcttttctttggacgcataagctacccatattagctccaaccttaaat 43119  T
Q  170 tgattttgaaaaaacaatcatgtaaaactattaagagcccccatactagttgatttatttagtacataactc 241  Q
    |||||||| || ||||||||  ||||| ||||||||| ||||| || |||||||||||||||||||||||||    
T  43118 tgattttggaacaacaatcacataaaattattaagag-ccccaaacaagttgatttatttagtacataactc 43048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 70 - 242
Target Start/End: Complemental strand, 33916 - 33744
Alignment:
Q  70 aaatggtaaattgattactaggtcacatcaataaaatgttgaaggctgaagcgtttttctttggatgcaaaagctattgatattagctccaaacttaaat 169  Q
    ||||||| |||||||||| | || |||||||||||||||||||||||||||||||||||||||||  ||||| |||   ||||||||||||| |||||||    
T  33916 aaatggtgaattgattacgaagttacatcaataaaatgttgaaggctgaagcgtttttctttggacacaaaatctacccatattagctccaaccttaaat 33817  T
Q  170 tgattttgaaaaaacaatcatgtaaaactattaagagcccccatactagttgatttatttagtacataactca 242  Q
     ||||||| || |||||||| ||||||  || ||||||  ||| || |||||||||||| |||||||||||||    
T  33816 cgattttggaacaacaatcacgtaaaatgataaagagcatccaaacaagttgatttattaagtacataactca 33744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 50949343 - 50949413
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtgaaaatgatggtatttttatcaattaatctgaaaaa 71  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  50949343 tggtatttttcagattttgagagaaggaggcacgtgaaaatgatggtatttttatcaattaatctgaaaaa 50949413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 44911226 - 44911285
Alignment:
Q  12 agattttgagagaaggagacacgtgaaaatgatggtatttttatcaattaatctgaaaaa 71  Q
    ||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||    
T  44911226 agattttgagataaggaggcacgtgaaaatgatggtatttttattaattaatctgaaaaa 44911285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 21687227 - 21687263
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  21687227 tggtatttttcagattttgagagaaggaggcacgtga 21687263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 44223973 - 44223937
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  44223973 tggtatttttcagattttgagagaaggaggcacgtga 44223937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 50429933 - 50429897
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  50429933 tggtatttttcagattttgagagaaggaggcacgtga 50429897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 9347404 - 9347369
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtg 36  Q
    ||||||||||||||||||||||||||||| ||||||    
T  9347404 tggtatttttcagattttgagagaaggaggcacgtg 9347369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 32162903 - 32162865
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtgaaa 39  Q
    ||||||||||||||||||||||||||| | |||||||||    
T  32162903 tggtatttttcagattttgagagaagggggcacgtgaaa 32162865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 46824129 - 46824095
Alignment:
Q  3 gtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||| |||||||    
T  46824129 gtatttttcagattttgagagaaggaggcacgtga 46824095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 20480383 - 20480416
Alignment:
Q  4 tatttttcagattttgagagaaggagacacgtga 37  Q
    |||||||||||||||||||||||||| |||||||    
T  20480383 tatttttcagattttgagagaaggaggcacgtga 20480416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6703651 - 6703687
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||| | |||||||    
T  6703651 tggtatttttcagattttgagagaagggggcacgtga 6703687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 27172312 - 27172340
Alignment:
Q  1 tggtatttttcagattttgagagaaggag 29  Q
    |||||||||||||||||||||||||||||    
T  27172312 tggtatttttcagattttgagagaaggag 27172340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 27172409 - 27172373
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||| | |||||||    
T  27172409 tggtatttttcagattttgagagaagggggcacgtga 27172373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 28634009 - 28633981
Alignment:
Q  1 tggtatttttcagattttgagagaaggag 29  Q
    |||||||||||||||||||||||||||||    
T  28634009 tggtatttttcagattttgagagaaggag 28633981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 70 - 242
Target Start/End: Original strand, 3340207 - 3340378
Alignment:
Q  70 aaatggtaaattgattactaggtcacatcaataaaatgttgaaggctgaagcgtttttctttggatgcaaaagctattgatattagctccaaacttaaat 169  Q
    ||||| |||||||||||| ||||| |||||||||| |||| |||||||||| | ||||| ||||| ||||||||||   ||||||||||||| |||||||    
T  3340207 aaatgataaattgattaccaggtcgcatcaataaattgtttaaggctgaagtgcttttccttggacgcaaaagcta-ccatattagctccaaccttaaat 3340305  T
Q  170 tgattttgaaaaaacaatcatgtaaaactattaagagcccccatactagttgatttatttagtacataactca 242  Q
     ||||||| |   |||| || ||||||||||||||||   ||| |  ||||||||||||||||||||||||||    
T  3340306 cgattttggagcgacaaccacgtaaaactattaagagtgaccaaataagttgatttatttagtacataactca 3340378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 29293130 - 29293195
Alignment:
Q  6 tttttcagattttgagagaaggagacacgtgaaaatgatggtatttttatcaattaatctgaaaaa 71  Q
    ||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||    
T  29293130 tttttcagattttgagagaagaaggcacatgaaaatgatggtatttttatcaattaatctgaaaaa 29293195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 37972249 - 37972213
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  37972249 tggtatttttcagattttgagagaaggagacacgtga 37972213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9035069 - 9035105
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  9035069 tggtatttttcagattttgagagaaggaggcacgtga 9035105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 20419177 - 20419141
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  20419177 tggtatttttcagattttgagagaaggaggcacgtga 20419141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 22740445 - 22740409
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  22740445 tggtatttttcagattttgagagaaggaggcacgtga 22740409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 37889112 - 37889076
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  37889112 tggtatttttcagattttgagagaaggaggcacgtga 37889076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 13741760 - 13741795
Alignment:
Q  2 ggtatttttcagattttgagagaaggagacacgtga 37  Q
    |||||||||||||||||||||||||||| |||||||    
T  13741760 ggtatttttcagattttgagagaaggaggcacgtga 13741795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 36527584 - 36527619
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtg 36  Q
    ||||||||||||||||||||||||||||| ||||||    
T  36527584 tggtatttttcagattttgagagaaggaggcacgtg 36527619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 3204941 - 3204909
Alignment:
Q  3 gtatttttcagattttgagagaaggagacacgt 35  Q
    ||||||||||||||||||||||||||| |||||    
T  3204941 gtatttttcagattttgagagaaggaggcacgt 3204909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 13741856 - 13741820
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||| | |||||||    
T  13741856 tggtatttttcagattttgagagaagggggcacgtga 13741820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 18864167 - 18864195
Alignment:
Q  1 tggtatttttcagattttgagagaaggag 29  Q
    |||||||||||||||||||||||||||||    
T  18864167 tggtatttttcagattttgagagaaggag 18864195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 37972153 - 37972181
Alignment:
Q  1 tggtatttttcagattttgagagaaggag 29  Q
    |||||||||||||||||||||||||||||    
T  37972153 tggtatttttcagattttgagagaaggag 37972181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 47666115 - 47666182
Alignment:
Q  4 tatttttcagattttgagagaaggagacacgtgaaaatgatggtatttttatcaattaatctgaaaaa 71  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  47666115 tatttttcagattttgagagaaggaggcacgtgaaaatgatggtatttttatcaattaatcttaaaaa 47666182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 40848815 - 40848779
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  40848815 tggtatttttcagattttgagagaaggagacacgtga 40848779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 24485310 - 24485274
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  24485310 tggtatttttcagattttgagagaaggaggcacgtga 24485274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26007381 - 26007417
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  26007381 tggtatttttcagattttgagagaaggaggcacgtga 26007417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 36180755 - 36180791
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  36180755 tggtatttttcagattttgagagaaggaggcacgtga 36180791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 53766447 - 53766411
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||| |||||||||||    
T  53766447 tggtatttttcagattttgagagaacgagacacgtga 53766411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 27238668 - 27238701
Alignment:
Q  4 tatttttcagattttgagagaaggagacacgtga 37  Q
    |||||||||||||||||||||||||| |||||||    
T  27238668 tatttttcagattttgagagaaggaggcacgtga 27238701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 48160183 - 48160150
Alignment:
Q  4 tatttttcagattttgagagaaggagacacgtga 37  Q
    |||||||||||||||||||||||||| |||||||    
T  48160183 tatttttcagattttgagagaaggaggcacgtga 48160150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 3353403 - 3353375
Alignment:
Q  1 tggtatttttcagattttgagagaaggag 29  Q
    |||||||||||||||||||||||||||||    
T  3353403 tggtatttttcagattttgagagaaggag 3353375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 40848718 - 40848754
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||| | |||||||    
T  40848718 tggtatttttcagattttgagagaagggggcacgtga 40848754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 2354614 - 2354679
Alignment:
Q  6 tttttcagattttgagagaaggagacacgtgaaaatgatggtatttttatcaattaatctgaaaaa 71  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  2354614 tttttcagattttgagagaaggatgcacgtgaaaatgatggtatttttatcaattaatctgaaaaa 2354679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 2935812 - 2935865
Alignment:
Q  70 aaatggtaaattgattactaggtcacatcaataaaatgttgaaggctgaagcgttttt 127  Q
    ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||    
T  2935812 aaatggtaaattgattactaggtcac----ataaaatgttgaaggctgaagcgttttt 2935865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 2986941 - 2986985
Alignment:
Q  70 aaatggtaaattgattactaggtcacatcaataaaatgttgaagg 114  Q
    |||||||||||| |||||| | |||||||||||||||||||||||    
T  2986941 aaatggtaaatttattactggatcacatcaataaaatgttgaagg 2986985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 22684124 - 22684160
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  22684124 tggtatttttcagattttgagagaaggaggcacgtga 22684160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 22754944 - 22754908
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  22754944 tggtatttttcagattttgagagaaggaggcacgtga 22754908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 32733848 - 32733812
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  32733848 tggtatttttcagattttgagagaaggagtcacgtga 32733812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 26207636 - 26207567
Alignment:
Q  2 ggtatttttcagattttgagagaaggagacacgtgaaaatgatggtatttttatcaattaatctgaaaaa 71  Q
    ||||||||| ||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||    
T  26207636 ggtattttttagattttgagataaggaggcacgtgaaaatgatggtatttttattaattaatctgaaaaa 26207567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 169291 - 169255
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  169291 tggtatttttcagattttgagagaaggaggcacgtga 169255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 292983 - 293019
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  292983 tggtatttttcagattttgagagaaggaggcacgtga 293019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9023445 - 9023481
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  9023445 tggtatttttcagattttgagagaaggaggcacgtga 9023481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 12757968 - 12758004
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  12757968 tggtatttttcagattttgagagaaggaggcacgtga 12758004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 28196549 - 28196585
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  28196549 tggtatttttcagattttgagagaaggaggcacgtga 28196585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 32703426 - 32703462
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  32703426 tggtatttttcagattttgagagaaggaggcacgtga 32703462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 39912341 - 39912305
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  39912341 tggtatttttcagattttgagagaaggaggcacgtga 39912305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 39086398 - 39086433
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtg 36  Q
    ||||||||||||||||||||||||||||| ||||||    
T  39086398 tggtatttttcagattttgagagaaggaggcacgtg 39086433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 48406236 - 48406202
Alignment:
Q  3 gtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||| |||||||    
T  48406236 gtatttttcagattttgagagaaggaggcacgtga 48406202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 293079 - 293051
Alignment:
Q  1 tggtatttttcagattttgagagaaggag 29  Q
    |||||||||||||||||||||||||||||    
T  293079 tggtatttttcagattttgagagaaggag 293051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 9023542 - 9023506
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||| | |||||||    
T  9023542 tggtatttttcagattttgagagaagggggcacgtga 9023506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 9380604 - 9380576
Alignment:
Q  1 tggtatttttcagattttgagagaaggag 29  Q
    |||||||||||||||||||||||||||||    
T  9380604 tggtatttttcagattttgagagaaggag 9380576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 12758065 - 12758029
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||| | |||||||    
T  12758065 tggtatttttcagattttgagagaagggggcacgtga 12758029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 25162070 - 25162098
Alignment:
Q  1 tggtatttttcagattttgagagaaggag 29  Q
    |||||||||||||||||||||||||||||    
T  25162070 tggtatttttcagattttgagagaaggag 25162098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 25162166 - 25162130
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||||  |||||||    
T  25162166 tggtatttttcagattttgagagaaggatgcacgtga 25162130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 39912244 - 39912280
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||| | |||||||    
T  39912244 tggtatttttcagattttgagagaagggggcacgtga 39912280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 41790761 - 41790696
Alignment:
Q  6 tttttcagattttgagagaaggagacacgtgaaaatgatggtatttttatcaattaatctgaaaaa 71  Q
    ||||||||||||||||| |||||| |||||||||||||| |||||||||| |||||||||||||||    
T  41790761 tttttcagattttgagataaggaggcacgtgaaaatgatagtatttttattaattaatctgaaaaa 41790696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 17851257 - 17851221
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  17851257 tggtatttttcagattttgagagaaggagacacgtga 17851221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 26692670 - 26692636
Alignment:
Q  3 gtatttttcagattttgagagaaggagacacgtga 37  Q
    |||||||||||||||||||||||||||||||||||    
T  26692670 gtatttttcagattttgagagaaggagacacgtga 26692636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 7979770 - 7979806
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    |||||||||||| ||||||||||||||||||||||||    
T  7979770 tggtatttttcatattttgagagaaggagacacgtga 7979806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 16911030 - 16911066
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  16911030 tggtatttttcagattttgagagaaggaggcacgtga 16911066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 17851170 - 17851206
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  17851170 tggtatttttcagattttgagagaaggaggcacgtga 17851206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6325206 - 6325170
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    |||||||||||||||||||| |||||||| |||||||    
T  6325206 tggtatttttcagattttgaaagaaggaggcacgtga 6325170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 8851348 - 8851384
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    |||||||||||| |||||||||||||||| |||||||    
T  8851348 tggtatttttcaaattttgagagaaggaggcacgtga 8851384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 50272 - 50308
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  50272 tggtatttttcagattttgagagaaggagacacgtga 50308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 50368 - 50340
Alignment:
Q  1 tggtatttttcagattttgagagaaggag 29  Q
    |||||||||||||||||||||||||||||    
T  50368 tggtatttttcagattttgagagaaggag 50340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 25438903 - 25438937
Alignment:
Q  3 gtatttttcagattttgagagaaggagacacgtga 37  Q
    |||||||||||||||||||||||||||||||||||    
T  25438903 gtatttttcagattttgagagaaggagacacgtga 25438937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6198946 - 6198910
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  6198946 tggtatttttcagattttgagagaaggaggcacgtga 6198910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 24473620 - 24473584
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  24473620 tggtatttttcagattttgagagaaggaggcacgtga 24473584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 37397007 - 37396971
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  37397007 tggtatttttcagattttgagagaaggaggcacgtga 37396971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 33726868 - 33726896
Alignment:
Q  1 tggtatttttcagattttgagagaaggag 29  Q
    |||||||||||||||||||||||||||||    
T  33726868 tggtatttttcagattttgagagaaggag 33726896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 34498313 - 34498341
Alignment:
Q  1 tggtatttttcagattttgagagaaggag 29  Q
    |||||||||||||||||||||||||||||    
T  34498313 tggtatttttcagattttgagagaaggag 34498341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 41662818 - 41662790
Alignment:
Q  1 tggtatttttcagattttgagagaaggag 29  Q
    |||||||||||||||||||||||||||||    
T  41662818 tggtatttttcagattttgagagaaggag 41662790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 531 - 567
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  531 tggtatttttcagattttgagagaaggaggcacgtga 567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 10098803 - 10098767
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||| |||||||||||    
T  10098803 tggtatttttcagattttgagagaatgagacacgtga 10098767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 21207515 - 21207479
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  21207515 tggtatttttcagattttgagagaaggaggcacgtga 21207479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 43463959 - 43463995
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  43463959 tggtatttttcagattttgagagaaggaggcacgtga 43463995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 41071991 - 41072026
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtg 36  Q
    ||||||||||||||||||||||||||||| ||||||    
T  41071991 tggtatttttcagattttgagagaaggaggcacgtg 41072026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 3888513 - 3888479
Alignment:
Q  3 gtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||| |||||||    
T  3888513 gtatttttcagattttgagagaaggaggcacgtga 3888479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 19514729 - 19514763
Alignment:
Q  3 gtatttttcagattttgagagaaggagacacgtga 37  Q
    |||||||||||||||||| ||||||||||||||||    
T  19514729 gtatttttcagattttgacagaaggagacacgtga 19514763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 10098706 - 10098742
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||| | |||||||    
T  10098706 tggtatttttcagattttgagagaagggggcacgtga 10098742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 19514824 - 19514788
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||| | |||||||    
T  19514824 tggtatttttcagattttgagagaagggggcacgtga 19514788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 22729293 - 22729265
Alignment:
Q  1 tggtatttttcagattttgagagaaggag 29  Q
    |||||||||||||||||||||||||||||    
T  22729293 tggtatttttcagattttgagagaaggag 22729265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 25940717 - 25940753
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||| | |||||||    
T  25940717 tggtatttttcagattttgagagaagggggcacgtga 25940753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 25940817 - 25940781
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    |||||||||| |||||||||||||||||| |||||||    
T  25940817 tggtattttttagattttgagagaaggaggcacgtga 25940781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 26571019 - 26570983
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  26571019 tggtatttttcagattttgagagaatgaggcacgtga 26570983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 37610393 - 37610429
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  37610393 tggtatttttctgattttgagagaaggaggcacgtga 37610429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 43464055 - 43464027
Alignment:
Q  1 tggtatttttcagattttgagagaaggag 29  Q
    |||||||||||||||||||||||||||||    
T  43464055 tggtatttttcagattttgagagaaggag 43464027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 19893 - 19859
Alignment:
Q  3 gtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||| |||||||    
T  19893 gtatttttcagattttgagagaaggaggcacgtga 19859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 38547 - 38513
Alignment:
Q  3 gtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||| |||||||    
T  38547 gtatttttcagattttgagagaaggaggcacgtga 38513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 10203 - 10175
Alignment:
Q  1 tggtatttttcagattttgagagaaggag 29  Q
    |||||||||||||||||||||||||||||    
T  10203 tggtatttttcagattttgagagaaggag 10175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 185031 - 185067
Alignment:
Q  1 tggtatttttcagattttgagagaaggagacacgtga 37  Q
    ||||||||||||||||||||||||||| | |||||||    
T  185031 tggtatttttcagattttgagagaagggggcacgtga 185067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 185128 - 185100
Alignment:
Q  1 tggtatttttcagattttgagagaaggag 29  Q
    |||||||||||||||||||||||||||||    
T  185128 tggtatttttcagattttgagagaaggag 185100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University