View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15696_low_3 (Length: 700)
Name: NF15696_low_3
Description: NF15696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15696_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 48 - 594
Target Start/End: Original strand, 51124221 - 51124754
Alignment:
| Q |
48 |
gatcctttcacccaatagtttggatatgaattgatggtccaactatcttttagcataagatatgatcacgaggtcaaatttaactttaaaaatgtatcga |
147 |
Q |
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| T |
51124221 |
gatcctttcatccaagagtttggatatgaattgatgatccaactatcttttagcataagatgtgatcacgagttcaaattcaactttaaaaatgtatcga |
51124320 |
T |
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| Q |
148 |
ttagtctaaacaattgtccattataattctattcagattgagtaattatatttgcacgaaaatggatccattcatgcttctctctcatgtttcaaatcac |
247 |
Q |
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| T |
51124321 |
ttagtctaaacaattgtccattgtaattctatacagattgagtaattatatttgcacgaaaatggatccattcat-------------gtttcaaatcac |
51124407 |
T |
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| Q |
248 |
caacctttatccatatttatttattttattaaatttgaaaattatctcctctctaggtacgaattaatctatgaatttacgtggcacgtttgagaatgct |
347 |
Q |
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| T |
51124408 |
caacctttatccatatttattttttttattaaatttgaaaattatctcctctctaggtacgaattaatctatgaatttacgtggcacgtttgagaatgct |
51124507 |
T |
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| Q |
348 |
caactcaatccaatgccaataatgttggaaaacttagatagtataaatgaggttctagtttgattcaacnnnnnnnncaataatgctggacttgtgctgt |
447 |
Q |
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| T |
51124508 |
caactcaatccaatgccaataatgttggaagacttagatagtataaatgaggttctagtttgattcaacaaaaaaaacaataatgctggaattgtgctgt |
51124607 |
T |
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| Q |
448 |
actttaaattcaattgaatagcaataattgattgccccactcgagtgcccacattttaaggtctggatgattttgtagctacttgctagcctgggttcac |
547 |
Q |
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| T |
51124608 |
acttaaaattcaattgaatagcaataattgattgccccactcgagtgcccacattttaaggtctggatgattttgtagctacttgctagcctgggttcac |
51124707 |
T |
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| Q |
548 |
tcgtgcaacaaaatgacaatatatatgagattattgggtgtgacacg |
594 |
Q |
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| T |
51124708 |
tcgtgcaacaaaatgacaatatgtatgagattattgggtgtgacacg |
51124754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 623 - 682
Target Start/End: Original strand, 51124778 - 51124837
Alignment:
| Q |
623 |
atgttatgttaggtatatgctatatcaatttttctctgccgttccttgtcattcagatat |
682 |
Q |
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| T |
51124778 |
atgttatattaggtatatgctatatcaatttttctctgccgttccttgtcattcagatat |
51124837 |
T |
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