View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15696_low_31 (Length: 249)

Name: NF15696_low_31

Description: NF15696

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF15696_low_31

[»] chr6 (1 HSPs)

[»] chr7 (1 HSPs)

Target: chr6 (Bit Score: 164; Significance: 9e-88; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 164; E-Value: 9e-88

Query Start/End: Original strand, 46 - 232

Target Start/End: Original strand, 9537866 - 9538057

Alignment:

Q	46	atatatataaaagtaatagaacaatactagtactactaagcacttacaatttccaacccagatgactgttatgatgaatgaaattaatatgctttggaac	145	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	9537866	atatatataaaagtaatagaacaatactagtactactaagcacttacaatttccaacccaaatgactgttatgatgaatgaaattaatatgctttggaac	9537965	T

Q	146	tccagaaaaggcatggatcagatctgaaaattggaagatttcataattaattc-----acataatgctagataactaaatatgcaattattt	232	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	9537966	tccagaaaaggcatggatcagatctgaaaattggaagatttcataattaattcacataacataatgctagataacaaaatatgcaattattt	9538057	T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 32; E-Value: 0.000000005

Query Start/End: Original strand, 86 - 177

Target Start/End: Complemental strand, 33718124 - 33718033

Alignment:

Q	86	cacttacaatttccaacccagatgactgttatgatgaatgaaattaatatgctttggaactccagaaaaggcatggatcagatctgaaaatt	177	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\| \|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\| \|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	33718124	cactcacaatttccaacccaaacgactactatgttgtatgaaattaatatcccttggcacctcagaaaaaacttggatcagatctgaaaatt	33718033	T

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