View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15696_low_36 (Length: 207)
Name: NF15696_low_36
Description: NF15696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15696_low_36 |
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| [»] chr8 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 7e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 16298534 - 16298328
Alignment:
| Q |
1 |
tcacagccacatggctgtgtatgatgaatttggatgtaagtttacatatttttatgttcatcttttttacggtttgaaacaatttaannnnnnnncaata |
100 |
Q |
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| T |
16298534 |
tcacagccacctggctgtgtatgatgaatttggatgtaagtttacatatttttatgttcatcttttttacggtttgaaacaatttaatttttgttcaata |
16298435 |
T |
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| Q |
101 |
ttgtataatactctgcttttcttgcagcttttgattttttggcttggcataacaacttcttgtcataggtatattattaaccctcctttaatcaaataat |
200 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||| |
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| T |
16298434 |
ttgtctaatactcttcttttcttgcagcttttgattttttggcttggcataacaactttttgtcataggtatattattaaccctcttttaatctaataat |
16298335 |
T |
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| Q |
201 |
atttact |
207 |
Q |
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||||||| |
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| T |
16298334 |
atttact |
16298328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 116 - 207
Target Start/End: Complemental strand, 16306130 - 16306039
Alignment:
| Q |
116 |
cttttcttgcagcttttgattttttggcttggcataacaacttcttgtcataggtatattattaaccctcctttaatcaaataatatttact |
207 |
Q |
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| T |
16306130 |
cttttcttgcagcttttgattttttggcttggcataacaactttttgtcataggtatattattaaccctcttttaatctaataatatttact |
16306039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 22896030 - 22895824
Alignment:
| Q |
1 |
tcacagccacatggctgtgtatgatgaatttggatgtaagtttacatatttttatgttcatcttttttacggtttgaaacaatttaannnnnnnncaata |
100 |
Q |
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||||| |||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||| |
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| T |
22896030 |
tcacaaccacctgactgtgtatgatgaatttggatgtaagtttacatatttttatgttaatcttttttacagtttgaaacaatttaatttttgttcaata |
22895931 |
T |
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| Q |
101 |
ttgtataatactctgcttttcttgcagcttttgattttttggcttggcataacaacttcttgtcataggtatattattaaccctcctttaatcaaataat |
200 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||| |
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| T |
22895930 |
ttgtctaatactcttcttttcttgcagcttttgattttttggcttggcataacaactttttgtcataggtatattattaaccctcttttaatctaataat |
22895831 |
T |
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| Q |
201 |
atttact |
207 |
Q |
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||||||| |
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| T |
22895830 |
atttact |
22895824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 15976761 - 15976702
Alignment:
| Q |
27 |
aatttggatgtaagtttacatatttttatgttcatcttttttacggtttgaaacaatttaa |
87 |
Q |
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| T |
15976761 |
aatttggatgtaagtttacatgtttttatgtccat-ttttcaacggtttgaaagaatttaa |
15976702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 14429033 - 14429116
Alignment:
| Q |
1 |
tcacagccacatggctgtgtatgatgaatttggatgtaagtttacatatttttatgttcatcttttttacggtttgaaacaattta |
86 |
Q |
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| T |
14429033 |
tcacagccacctggctatgtttgataaatttagatgtaagtttacat-gttttattttcatc-tttttacagtttgaaacaattta |
14429116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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